Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2723_(-)_3034919_3036112
DateWed Aug 7 12:50:37 BST 2019
Unique Job ID0c4a4686d3cde8bc
SequenceMGASGLVWTL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:19.502 Y:49.805 Z:34.472
Model (left) based on template c5fmnB_
Top template information
PDB header:dna binding protein
Chain: B: PDB Molecule:inrs;
PDBTitle: the nickel-responsive transcriptional regulator inrs
Confidence and coverage
Confidence: 47.3% Coverage: 12%
48 residues ( 12% of your sequence) have been modelled with 47.3% confidence by the single highest scoring template.
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3D viewing
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5fmnB_
47.3 17
PDB header:dna binding protein
Chain: B: PDB Molecule:inrs;
PDBTitle: the nickel-responsive transcriptional regulator inrs
2c5lbmD_
41.1 23
PDB header:transcription
Chain: D: PDB Molecule:transcriptional repressor frmr;
PDBTitle: the asymmetric tetrameric structure of the formaldehyde sensing2 transcriptional repressor frmr from escherichia coli
3c4m1pA_
40.1 17
PDB header:transcription repressor
Chain: A: PDB Molecule:copper-sensitive operon repressor (csor);
PDBTitle: crystal structure of the copper-sensing repressor csor with cu(i) from2 geobacillus thermodenitrificans ng80-2
4c6e8wC_
39.1 19
PDB header:viral protein
Chain: C: PDB Molecule:envelope glycoprotein gp160;
PDBTitle: mper-tm domain of hiv-1 envelope glycoprotein (env)
5c5lcyD_
37.3 17
PDB header:transcription
Chain: D: PDB Molecule:frmr;
PDBTitle: formaldehyde-responsive regulator frmr e64h variant from salmonella2 enterica serovar typhimurium
6c2f49C_
32.5 47
PDB header:transferase
Chain: C: PDB Molecule:ste5 peptide;
PDBTitle: crystal structure of fus3 in complex with a ste5 peptide
7c5yc0Q_
25.4 21
PDB header:viral protein/inhibitor
Chain: Q: PDB Molecule:lp-46;
PDBTitle: crystal structure of lp-46/n44
8c5yc0W_
25.4 21
PDB header:viral protein/inhibitor
Chain: W: PDB Molecule:lp-46;
PDBTitle: crystal structure of lp-46/n44
9c5yc0I_
25.4 21
PDB header:viral protein/inhibitor
Chain: I: PDB Molecule:lp-46;
PDBTitle: crystal structure of lp-46/n44
10c5yc0P_
24.3 21
PDB header:viral protein/inhibitor
Chain: P: PDB Molecule:lp-46;
PDBTitle: crystal structure of lp-46/n44
11c5yc0G_
24.3 21
PDB header:viral protein/inhibitor
Chain: G: PDB Molecule:lp-46;
PDBTitle: crystal structure of lp-46/n44
12c2sivD_
21.3 21
PDB header:envelope glycoprotein
Chain: D: PDB Molecule:siv gp41 glycoprotein;
PDBTitle: siv gp41 core structure
13c5yqrA_
19.7 26
PDB header:transport protein
Chain: A: PDB Molecule:endolysin/membrane-anchored lipid-binding protein lam6
PDBTitle: crystal structure of the ph-like domain of lam6
14c6btmD_
19.6 15
PDB header:membrane protein
Chain: D: PDB Molecule:alternative complex iii subunit d;
PDBTitle: structure of alternative complex iii from flavobacterium johnsoniae2 (wild type)
15c5jr0A_
17.7 23
PDB header:metal binding protein
Chain: A: PDB Molecule:sodium channel protein type 4 subunit alpha;
PDBTitle: domain 4 segment 6 of voltage-gated sodium channel nav1.4
16c2bg9B_
17.6 16
PDB header:ion channel/receptor
Chain: B: PDB Molecule:acetylcholine receptor protein, beta chain;
PDBTitle: refined structure of the nicotinic acetylcholine receptor2 at 4a resolution.
17c1yewI_
17.4 9
PDB header:oxidoreductase, membrane protein
Chain: I: PDB Molecule:particulate methane monooxygenase, b subunit;
PDBTitle: crystal structure of particulate methane monooxygenase
18c3rgbA_
17.4 9
PDB header:oxidoreductase
Chain: A: PDB Molecule:methane monooxygenase subunit b2;
PDBTitle: crystal structure of particulate methane monooxygenase from2 methylococcus capsulatus (bath)
19c6dmoA_
17.4 11
PDB header:protein binding
Chain: A: PDB Molecule:protein patched homolog 1;
PDBTitle: cryo-em structure of human ptch1 with three mutations2 l282q/t500f/p504l
20c4adzA_
16.7 20
PDB header:transcription
Chain: A: PDB Molecule:csor;
PDBTitle: crystal structure of the apo form of a copper-sensitive operon2 regulator (csor) protein from streptomyces lividans
21c3h00A_
not modelled 16.0 25
PDB header:viral protein
Chain: A: PDB Molecule:envelope glycoprotein gp160;
PDBTitle: structure of the c-terminal domain of a putative hiv-1 gp41 fusion2 intermediate
22c5yc0H_
not modelled 14.8 17
PDB header:viral protein/inhibitor
Chain: H: PDB Molecule:lp-46;
PDBTitle: crystal structure of lp-46/n44
23c2vl0A_
not modelled 14.3 13
PDB header:membrane protein
Chain: A: PDB Molecule:elic pentameric ligand gated ion channel from
PDBTitle: x-ray structure of a pentameric ligand gated ion channel2 from erwinia chrysanthemi (elic)
24c4qidB_
not modelled 14.1 10
PDB header:membrane protein
Chain: B: PDB Molecule:bacteriorhodopsin-i;
PDBTitle: crystal structure of haloquadratum walsbyi bacteriorhodopsin
25c5wdaL_
not modelled 13.9 19
PDB header:protein transport
Chain: L: PDB Molecule:general secretion pathway protein g;
PDBTitle: structure of the pulg pseudopilus
26c3u3iA_
not modelled 13.4 23
PDB header:rna binding protein
Chain: A: PDB Molecule:nucleocapsid protein;
PDBTitle: a rna binding protein from crimean-congo hemorrhagic fever virus
27c6ckoC_
not modelled 13.2 22
PDB header:dna binding protein/transferase
Chain: C: PDB Molecule:histone-lysine n-methyltransferase, h3 lysine-79 specific;
PDBTitle: crystal structure of an af10 fragment
28c6ckoD_
not modelled 13.2 22
PDB header:dna binding protein/transferase
Chain: D: PDB Molecule:histone-lysine n-methyltransferase, h3 lysine-79 specific;
PDBTitle: crystal structure of an af10 fragment
29c6nr2A_
not modelled 12.8 22
PDB header:transport protein
Chain: A: PDB Molecule:transient receptor potential cation channel subfamily m
PDBTitle: cryo-em structure of the trpm8 ion channel in complex with the menthol2 analog ws-12 and pi(4,5)p2
30c6nr2C_
not modelled 12.8 22
PDB header:transport protein
Chain: C: PDB Molecule:transient receptor potential cation channel subfamily m
PDBTitle: cryo-em structure of the trpm8 ion channel in complex with the menthol2 analog ws-12 and pi(4,5)p2
31c6nr2B_
not modelled 12.8 22
PDB header:transport protein
Chain: B: PDB Molecule:transient receptor potential cation channel subfamily m
PDBTitle: cryo-em structure of the trpm8 ion channel in complex with the menthol2 analog ws-12 and pi(4,5)p2
32c6nr2D_
not modelled 12.8 22
PDB header:transport protein
Chain: D: PDB Molecule:transient receptor potential cation channel subfamily m
PDBTitle: cryo-em structure of the trpm8 ion channel in complex with the menthol2 analog ws-12 and pi(4,5)p2
33c3k07A_
not modelled 12.5 14
PDB header:transport protein
Chain: A: PDB Molecule:cation efflux system protein cusa;
PDBTitle: crystal structure of cusa
34c4aq5B_
not modelled 12.4 16
PDB header:membrane protein
Chain: B: PDB Molecule:acetylcholine receptor beta subunit;
PDBTitle: gating movement in acetylcholine receptor analysed by time-resolved2 electron cryo-microscopy (closed class)
35c3wt9A_
not modelled 11.9 15
PDB header:proton transport
Chain: A: PDB Molecule:rhodopsin i;
PDBTitle: crystal structure of the cell-free synthesized membrane protein,2 acetabularia rhodopsin i, at 1.48 angstrom
36d1h2sa_
not modelled 11.8 17
Fold:Family A G protein-coupled receptor-like
Superfamily:Family A G protein-coupled receptor-like
Family:Bacteriorhodopsin-like
37c4pj0L_
not modelled 11.6 22
PDB header:oxidoreductase, electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: structure of t.elongatus photosystem ii, rows of dimers crystal2 packing
38c4pj0l_
not modelled 11.6 22
PDB header:oxidoreductase, electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: structure of t.elongatus photosystem ii, rows of dimers crystal2 packing
39c4ub6l_
not modelled 11.4 22
PDB header:electron transport, photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: native structure of photosystem ii (dataset-1) by a femtosecond x-ray2 laser
40c5e7cl_
not modelled 11.4 22
PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: macromolecular diffractive imaging using imperfect crystals - bragg2 data
41c4ixql_
not modelled 11.4 22
PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: rt fs x-ray diffraction of photosystem ii, dark state
42c4fbyd_
not modelled 11.4 22
PDB header:photosynthesis
Chain: D: PDB Molecule:photosystem ii d2 protein;
PDBTitle: fs x-ray diffraction of photosystem ii
43c3bz2L_
not modelled 11.4 22
PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of cyanobacterial photosystem ii (part 2 of 2). this2 file contains second monomer of psii dimer
44c4ub8l_
not modelled 11.4 22
PDB header:electron transport, photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: native structure of photosystem ii (dataset-2) by a femtosecond x-ray2 laser
45c1s5lL_
not modelled 11.4 22
PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center l protein;
PDBTitle: architecture of the photosynthetic oxygen evolving center
46c4fbyL_
not modelled 11.4 22
PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: fs x-ray diffraction of photosystem ii
47c4tniL_
not modelled 11.4 22
PDB header:electron transport,photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: rt xfel structure of photosystem ii 500 ms after the third2 illumination at 4.6 a resolution
48c4il6l_
not modelled 11.4 22
PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: structure of sr-substituted photosystem ii
49c2axtl_
not modelled 11.4 22
PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center l protein;
PDBTitle: crystal structure of photosystem ii from thermosynechococcus elongatus
50c4rvyL_
not modelled 11.4 22
PDB header:oxidoreductase
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: serial time resolved crystallography of photosystem ii using a2 femtosecond x-ray laser. the s state after two flashes (s3)
51c4rvyl_
not modelled 11.4 22
PDB header:oxidoreductase
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: serial time resolved crystallography of photosystem ii using a2 femtosecond x-ray laser. the s state after two flashes (s3)
52c4tnhL_
not modelled 11.4 22
PDB header:electron transport,photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: rt xfel structure of photosystem ii in the dark state at 4.9 a2 resolution
53c3prqL_
not modelled 11.4 22
PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of cyanobacterial photosystem ii in complex with2 terbutryn (part 1 of 2). this file contains first monomer of psii3 dimer
54c5e7cL_
not modelled 11.4 22
PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: macromolecular diffractive imaging using imperfect crystals - bragg2 data
55c3kziL_
not modelled 11.4 22
PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of monomeric form of cyanobacterial photosystem ii
56c3arcL_
not modelled 11.4 22
PDB header:electron transport, photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of oxygen-evolving photosystem ii at 1.9 angstrom2 resolution
57c3bz1L_
not modelled 11.4 22
PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of cyanobacterial photosystem ii (part 1 of 2). this2 file contains first monomer of psii dimer
58c4ixrl_
not modelled 11.4 22
PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: rt fs x-ray diffraction of photosystem ii, first illuminated state
59c2axtL_
not modelled 11.4 22
PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center l protein;
PDBTitle: crystal structure of photosystem ii from thermosynechococcus elongatus
60d2axtl1
not modelled 11.4 22
Fold:Single transmembrane helix
Superfamily:Photosystem II reaction center protein L, PsbL
Family:PsbL-like
61c4tnkl_
not modelled 11.4 22
PDB header:electron transport,photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: rt xfel structure of photosystem ii 250 microsec after the third2 illumination at 5.2 a resolution
62c4ixqL_
not modelled 11.4 22
PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: rt fs x-ray diffraction of photosystem ii, dark state
63c4tnil_
not modelled 11.4 22
PDB header:electron transport,photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: rt xfel structure of photosystem ii 500 ms after the third2 illumination at 4.6 a resolution
64c4il6L_
not modelled 11.4 22
PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: structure of sr-substituted photosystem ii
65c3prrL_
not modelled 11.4 22
PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of cyanobacterial photosystem ii in complex with2 terbutryn (part 2 of 2). this file contains second monomer of psii3 dimer
66c4ub8L_
not modelled 11.4 22
PDB header:electron transport, photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: native structure of photosystem ii (dataset-2) by a femtosecond x-ray2 laser
67c3wu2L_
not modelled 11.4 22
PDB header:electron transport, photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure analysis of photosystem ii complex
68c4ub6L_
not modelled 11.4 22
PDB header:electron transport, photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: native structure of photosystem ii (dataset-1) by a femtosecond x-ray2 laser
69c4tnjL_
not modelled 11.4 22
PDB header:electron transport,photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: rt xfel structure of photosystem ii 500 ms after the 2nd illumination2 (2f) at 4.5 a resolution
70c4ixrL_
not modelled 11.4 22
PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: rt fs x-ray diffraction of photosystem ii, first illuminated state
71c1s5ll_
not modelled 11.4 22
PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center l protein;
PDBTitle: architecture of the photosynthetic oxygen evolving center
72c3wu2l_
not modelled 11.4 22
PDB header:electron transport, photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure analysis of photosystem ii complex
73c4tnhl_
not modelled 11.4 22
PDB header:electron transport,photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: rt xfel structure of photosystem ii in the dark state at 4.9 a2 resolution
74c4tnkL_
not modelled 11.4 22
PDB header:electron transport,photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: rt xfel structure of photosystem ii 250 microsec after the third2 illumination at 5.2 a resolution
75c4tnjl_
not modelled 11.4 22
PDB header:electron transport,photosynthesis
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: rt xfel structure of photosystem ii 500 ms after the 2nd illumination2 (2f) at 4.5 a resolution
76c3a0hL_
not modelled 10.9 22
PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of i-substituted photosystem ii complex
77c3a0hl_
not modelled 10.9 22
PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of i-substituted photosystem ii complex
78c3a0bl_
not modelled 10.9 22
PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of br-substituted photosystem ii complex
79c2hh7A_
not modelled 10.4 9
PDB header:unknown function
Chain: A: PDB Molecule:hypothetical protein csor;
PDBTitle: crystal structure of cu(i) bound csor from mycobacterium tuberculosis.
80c1bhbA_
not modelled 10.2 34
PDB header:photoreceptor
Chain: A: PDB Molecule:bacteriorhodopsin;
PDBTitle: three-dimensional structure of (1-71) bacterioopsin2 solubilized in methanol-chloroform and sds micelles3 determined by 15n-1h heteronuclear nmr spectroscopy
81c6nr3A_
not modelled 10.0 22
PDB header:transport protein
Chain: A: PDB Molecule:transient receptor potential cation channel subfamily m
PDBTitle: cryo-em structure of the trpm8 ion channel in complex with high2 occupancy icilin, pi(4,5)p2, and calcium
82c6nr3D_
not modelled 10.0 22
PDB header:transport protein
Chain: D: PDB Molecule:transient receptor potential cation channel subfamily m
PDBTitle: cryo-em structure of the trpm8 ion channel in complex with high2 occupancy icilin, pi(4,5)p2, and calcium
83c6nr3B_
not modelled 10.0 22
PDB header:transport protein
Chain: B: PDB Molecule:transient receptor potential cation channel subfamily m
PDBTitle: cryo-em structure of the trpm8 ion channel in complex with high2 occupancy icilin, pi(4,5)p2, and calcium
84c6nr3C_
not modelled 10.0 22
PDB header:transport protein
Chain: C: PDB Molecule:transient receptor potential cation channel subfamily m
PDBTitle: cryo-em structure of the trpm8 ion channel in complex with high2 occupancy icilin, pi(4,5)p2, and calcium
85c6mq2D_
not modelled 9.9 23
PDB header:de novo protein
Chain: D: PDB Molecule:mini-evgl membrane protein;
PDBTitle: de novo design of membrane protein--mini-evgl membrane protein, c22212 form-2
86d1ix1a_
not modelled 9.9 13
Fold:Peptide deformylase
Superfamily:Peptide deformylase
Family:Peptide deformylase
87d1xeoa1
not modelled 9.7 16
Fold:Peptide deformylase
Superfamily:Peptide deformylase
Family:Peptide deformylase
88c2lowA_
not modelled 9.4 6
PDB header:membrane protein
Chain: A: PDB Molecule:apelin receptor;
PDBTitle: solution structure of ar55 in 50% hfip
89c6d73B_
not modelled 9.3 17
PDB header:transport protein
Chain: B: PDB Molecule:transient receptor potential cation channel, subfamily m;
PDBTitle: cryo-em structure of the zebrafish trpm2 channel in the presence of2 ca2+
90c3a0bL_
not modelled 9.3 22
PDB header:electron transport
Chain: L: PDB Molecule:photosystem ii reaction center protein l;
PDBTitle: crystal structure of br-substituted photosystem ii complex
91c6owsB_
not modelled 9.2 19
PDB header:membrane protein
Chain: B: PDB Molecule:efflux pump membrane transporter;
PDBTitle: cryo-em structure of an acinetobacter baumannii multidrug efflux pump
92d1r89a1
not modelled 9.1 35
Fold:PAP/OAS1 substrate-binding domain
Superfamily:PAP/OAS1 substrate-binding domain
Family:Archaeal tRNA CCA-adding enzyme substrate-binding domain
93c6drkD_
not modelled 9.0 15
PDB header:transport protein
Chain: D: PDB Molecule:transient receptor potential cation channel, subfamily m,
PDBTitle: structure of trpm2 ion channel receptor by single particle electron2 cryo-microscopy, apo state
94c2m4eA_
not modelled 9.0 25
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: solution nmr structure of vv2_0175 from vibrio vulnificus, nesg target2 vnr1 and csgid target idp91333
95c3vieF_
not modelled 8.8 33
PDB header:viral protein/antiviral protein
Chain: F: PDB Molecule:sifuvirtide;
PDBTitle: hiv-gp41 fusion inhibitor sifuvirtide
96c3h87D_
not modelled 8.7 38
PDB header:toxin/antitoxin
Chain: D: PDB Molecule:putative uncharacterized protein;
PDBTitle: rv0301 rv0300 toxin antitoxin complex from mycobacterium tuberculosis
97c4wxlB_
not modelled 8.6 14
PDB header:hydrolase
Chain: B: PDB Molecule:peptide deformylase;
PDBTitle: crystal structure of a peptide deformylase from haemophilus influenzae2 complex with actinonin
98c3jcul_
not modelled 8.5 15
PDB header:membrane protein
Chain: L: PDB Molecule:protein photosystem ii reaction center protein l;
PDBTitle: cryo-em structure of spinach psii-lhcii supercomplex at 3.2 angstrom2 resolution
99c1aikC_
not modelled 8.2 27
PDB header:viral protein
Chain: C: PDB Molecule:hiv-1 gp41 glycoprotein;
PDBTitle: hiv gp41 core structure

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Transmembrane helix prediction 

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