Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2799_(-)_3107778_3108407
DateWed Aug 7 12:50:46 BST 2019
Unique Job ID69498bd2c7c359ad
SequenceLYTPGKGPPR ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:16.357 Y:22.875 Z:43.580
Model (left) based on template d2pbea1
Top template information
Fold:PAP/OAS1 substrate-binding domain
Superfamily:PAP/OAS1 substrate-binding domain
Family:AadK C-terminal domain-like
Confidence and coverage
Confidence: 35.1% Coverage: 9%
18 residues ( 9% of your sequence) have been modelled with 35.1% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2pbea1



35.1 50
Fold:PAP/OAS1 substrate-binding domain
Superfamily:PAP/OAS1 substrate-binding domain
Family:AadK C-terminal domain-like
2d1chka_



21.7 32
Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:Chitosanase
3c2rpsA_



18.3 90
PDB header:immune system
Chain: A: PDB Molecule:chemokine;
PDBTitle: solution structure of a novel insect chemokine isolated from2 integument
4c3j6vO_



15.8 28
PDB header:ribosome
Chain: O: PDB Molecule:28s ribosomal protein s15, mitochondrial;
PDBTitle: cryo-em structure of the small subunit of the mammalian mitochondrial2 ribosome
5c4m6tA_



15.5 44
PDB header:transcription regulator
Chain: A: PDB Molecule:rna polymerase ii-associated factor 1 homolog, linker, rna
PDBTitle: structure of human paf1 and leo1 complex
6d1wjpa3



14.6 55
Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:Classic zinc finger, C2H2
7c5lcsA_



12.7 63
PDB header:immune system
Chain: A: PDB Molecule:gallinacin-7;
PDBTitle: nmr structure of chicken avbd7 defensin
8c2okqB_



12.6 64
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:hypothetical protein ybaa;
PDBTitle: crystal structure of unknown conserved ybaa protein from shigella2 flexneri
9d3dssb1



11.6 32
Fold:alpha/alpha toroid
Superfamily:Terpenoid cyclases/Protein prenyltransferases
Family:Protein prenyltransferases
10d1kl9a1



10.7 38
Fold:SAM domain-like
Superfamily:eIF2alpha middle domain-like
Family:eIF2alpha middle domain-like
11d1m4ma_



10.2 24
Fold:Inhibitor of apoptosis (IAP) repeat
Superfamily:Inhibitor of apoptosis (IAP) repeat
Family:Inhibitor of apoptosis (IAP) repeat
12c6cnuB_



10.0 83
PDB header:toxin
Chain: B: PDB Molecule:jztx-v;
PDBTitle: crystal structure of jztx-v
13d1s4ka_



9.8 36
Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:YdiL-like
14d1n1ba1



9.7 30
Fold:alpha/alpha toroid
Superfamily:Terpenoid cyclases/Protein prenyltransferases
Family:Terpenoid cyclase N-terminal domain
15d1ypzf2



9.5 14
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
16c3psqA_



9.3 22
PDB header:hydrolase
Chain: A: PDB Molecule:hypothetical exported protein;
PDBTitle: crystal structure of spy0129, a streptococcus pyogenes class b sortase2 involved in pilus biogenesis
17d5easa1



9.1 60
Fold:alpha/alpha toroid
Superfamily:Terpenoid cyclases/Protein prenyltransferases
Family:Terpenoid cyclase N-terminal domain
18c4gkgA_



8.4 45
PDB header:signaling protein
Chain: A: PDB Molecule:c4-dicarboxylate transport sensor protein dctb;
PDBTitle: crystal structure of the s-helix linker
19c2n59A_



8.2 21
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein csgh;
PDBTitle: solution structure of r. palustris csgh
20c5yfkA_



8.1 22
PDB header:transferase
Chain: A: PDB Molecule:uncharacterized protein sortase b;
PDBTitle: x-ray structure of a mutant form c232s of clostridium perfringens2 sortase b
21c6cgwA_



not modelled 7.8 83
PDB header:toxin
Chain: A: PDB Molecule:beta/kappa-theraphotoxin-cg2a;
PDBTitle: solution nmr structure of jztx-v, a nav 1.7 inhibitory peptide
22d1tqza1



not modelled 7.8 28
Fold:PH domain-like barrel
Superfamily:PH domain-like
Family:Necap1 N-terminal domain-like
23c2juyA_



not modelled 7.8 47
PDB header:antitumor protein
Chain: A: PDB Molecule:neopetrosiamide a;
PDBTitle: nmr ensemble of neopetrosiamide a
24c6chcA_



not modelled 7.5 83
PDB header:toxin
Chain: A: PDB Molecule:beta/kappa-theraphotoxin-cg2a;
PDBTitle: jztx-v toxin peptide, wild-type
25d2oqza1



not modelled 7.3 39
Fold:Sortase
Superfamily:Sortase
Family:Sortase
26c5z5kB_



not modelled 7.2 83
PDB header:apoptosis/inbititor
Chain: B: PDB Molecule:draxin;
PDBTitle: structure of the dcc-draxin complex
27c1zhqB_



not modelled 7.0 14
PDB header:sugar binding protein
Chain: B: PDB Molecule:mannan-binding lectin;
PDBTitle: crystal structure of apo mvl
28c3zfsA_



not modelled 6.9 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:f420-reducing hydrogenase, subunit alpha;
PDBTitle: cryo-em structure of the f420-reducing nife-hydrogenase from a2 methanogenic archaeon with bound substrate
29d1n0ua5



not modelled 6.8 23
Fold:Ferredoxin-like
Superfamily:EF-G C-terminal domain-like
Family:EF-G/eEF-2 domains III and V
30c4c3oC_



not modelled 6.7 30
PDB header:oxidoreductase
Chain: C: PDB Molecule:hydrogenase-1 large subunit;
PDBTitle: structure and function of an oxygen tolerant nife hydrogenase from2 salmonella
31c4dwcA_



not modelled 6.6 24
PDB header:viral protein
Chain: A: PDB Molecule:e(rns) glycoprotein;
PDBTitle: crystal structure of the glycoprotein erns from the pestivirus bvdv-12 in complex with zn ions
32c5yy0A_



not modelled 6.6 20
PDB header:metal binding protein
Chain: A: PDB Molecule:cytosolic nife-hydrogenase, alpha subunit;
PDBTitle: crystal structure of the hyhl-hypa complex (form ii)
33c1v7fA_



not modelled 6.6 67
PDB header:toxin
Chain: A: PDB Molecule:phrixotoxin 1;
PDBTitle: solution structure of phrixotoxin 1
34d1v7fa_



not modelled 6.6 67
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:omega toxin-like
Family:Spider toxins
35d2vana2



not modelled 6.6 21
Fold:Nucleotidyltransferase
Superfamily:Nucleotidyltransferase
Family:DNA polymerase beta-like
36c4oltA_



not modelled 6.4 26
PDB header:hydrolase
Chain: A: PDB Molecule:chitosanase;
PDBTitle: chitosanase complex structure
37d1qwza_



not modelled 6.4 26
Fold:Sortase
Superfamily:Sortase
Family:Sortase
38c6ehqM_



not modelled 6.3 20
PDB header:oxidoreductase
Chain: M: PDB Molecule:hydrogenase-2 large chain;
PDBTitle: e. coli hydrogenase-2 (as isolated form).
39c4v3aC_



not modelled 6.3 26
PDB header:transport protein
Chain: C: PDB Molecule:pleurotolysin b;
PDBTitle: membrane bound pleurotolysin prepore (tmh1 lock) trapped with2 engineered disulphide cross-link
40c5jcvA_



not modelled 6.2 35
PDB header:hydrolase
Chain: A: PDB Molecule:lmo2181 protein;
PDBTitle: sortase b from listeria monocytogenes.
41d2raxa1



not modelled 6.0 24
Fold:Inhibitor of apoptosis (IAP) repeat
Superfamily:Inhibitor of apoptosis (IAP) repeat
Family:Inhibitor of apoptosis (IAP) repeat
42c2n2aA_



not modelled 5.9 21
PDB header:membrane protein
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2;
PDBTitle: spatial structure of her2/erbb2 dimeric transmembrane domain in the2 presence of cytoplasmic juxtamembrane domains
43c1lupA_



not modelled 5.7 67
PDB header:toxin
Chain: A: PDB Molecule:gsmtx2;
PDBTitle: solution structure of a toxin (gsmtx2) from the tarantula,2 grammostola spatulata, which inhibits mechanosensitive ion3 channels
44c2l66B_



not modelled 5.7 30
PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator, abrb family;
PDBTitle: the dna-recognition fold of sso7c4 suggests a new member of spovt-abrb2 superfamily from archaea.
45c3q38A_



not modelled 5.6 44
PDB header:viral protein
Chain: A: PDB Molecule:capsid protein;
PDBTitle: crystal structure of p domain from norwalk virus strain vietnam 026 in2 complex with hbga type b (triglycan)
46d1yq9h1



not modelled 5.6 15
Fold:HydB/Nqo4-like
Superfamily:HydB/Nqo4-like
Family:Nickel-iron hydrogenase, large subunit
47c2kdpA_



not modelled 5.5 58
PDB header:transcription
Chain: A: PDB Molecule:histone deacetylase complex subunit sap30;
PDBTitle: solution structure of the sap30 zinc finger motif
48d1frfl_



not modelled 5.4 20
Fold:HydB/Nqo4-like
Superfamily:HydB/Nqo4-like
Family:Nickel-iron hydrogenase, large subunit
49c3useL_



not modelled 5.4 24
PDB header:oxidoreductase
Chain: L: PDB Molecule:hydrogenase-1 large chain;
PDBTitle: crystal structure of e. coli hydrogenase-1 in its as-isolated form
50d2q1ma1



not modelled 5.2 16
Fold:TNF-like
Superfamily:TNF-like
Family:TNF-like
51d1tcra2



not modelled 5.1 26
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:C1 set domains (antibody constant domain-like)
52c2df7H_



not modelled 5.1 29
PDB header:virus like particle
Chain: H: PDB Molecule:structural polyprotein vp2;
PDBTitle: crystal structure of infectious bursal disease virus vp2 subviral2 particle

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Transmembrane helix prediction 

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