Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2820c_(-)_3127374_3128282
DateWed Aug 7 12:50:48 BST 2019
Unique Job IDd6a4de4a30c99cc0
SequenceMNSRLFRFDF ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:57.693 Y:55.856 Z:58.803
Model (left) based on template c6ig0B_
Top template information
PDB header:rna binding protein
Chain: B: PDB Molecule:type iii-a crispr-associated ramp protein csm4;
PDBTitle: type iii-a csm complex, cryo-em structure of csm-ctr1, atp bound
Confidence and coverage
Confidence:100.0% Coverage: 93%
282 residues ( 93% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c6ig0B_



100.0 38
PDB header:rna binding protein
Chain: B: PDB Molecule:type iii-a crispr-associated ramp protein csm4;
PDBTitle: type iii-a csm complex, cryo-em structure of csm-ctr1, atp bound
2c6muuE_



100.0 23
PDB header:rna binding protein/rna
Chain: E: PDB Molecule:uncharacterized protein csm4;
PDBTitle: cryo-em structure of csm-crrna binary complex in type iii-a crispr-cas2 system
3c4qtsB_



100.0 21
PDB header:rna binding protein
Chain: B: PDB Molecule:crispr type iii-associated ramp protein csm4;
PDBTitle: crystal structure of csm3-csm4 subcomplex in the type iii-a crispr-cas2 interference complex
4c4n0lB_



98.6 14
PDB header:rna binding protein
Chain: B: PDB Molecule:predicted component of a thermophile-specific dna repair
PDBTitle: methanopyrus kandleri csm3 crystal structure
5c6ae2B_



98.6 22
PDB header:rna binding protein
Chain: B: PDB Molecule:csm3;
PDBTitle: crystal structure of csm3 of the type iii-a crispr-cas effector2 complex
6c6ifnF_



98.5 16
PDB header:rna binding protein
Chain: F: PDB Molecule:type iii-a crispr-associated ramp protein csm3;
PDBTitle: crystal structure of type iii-a crispr csm complex
7c4w8wB_



98.5 18
PDB header:hydrolase
Chain: B: PDB Molecule:crispr system cmr subunit cmr4;
PDBTitle: crystal structure of oligomeric cmr4 from pyrococcus furiosus
8c5yjdB_



98.2 15
PDB header:hydrolase
Chain: B: PDB Molecule:csm3;
PDBTitle: structural insights into the crispr-cas-associated ribonuclease2 activity of staphylococcus epidermidis csm3
9c6musK_



98.1 15
PDB header:rna binding protein/rna
Chain: K: PDB Molecule:uncharacterized protein csm3;
PDBTitle: cryo-em structure of larger csm-crrna-target rna ternary complex in2 type iii-a crispr-cas system
10c4w8vA_



97.4 13
PDB header:rna binding protein
Chain: A: PDB Molecule:crispr system cmr subunit cmr6;
PDBTitle: crystal structure of cmr6 from pyrococcus furiosus
11c3x1lE_



97.3 19
PDB header:rna binding protein/rna/dna
Chain: E: PDB Molecule:cmr4;
PDBTitle: crystal structure of the crispr-cas rna silencing cmr complex bound to2 a target analog
12c4h4kA_



97.3 14
PDB header:rna binding protein
Chain: A: PDB Molecule:crispr system cmr subunit cmr3;
PDBTitle: structure of the cmr2-cmr3 subcomplex of the cmr rna-silencing complex
13c4qtsC_



97.1 16
PDB header:rna binding protein
Chain: C: PDB Molecule:crispr type iii-associated ramp protein csm3;
PDBTitle: crystal structure of csm3-csm4 subcomplex in the type iii-a crispr-cas2 interference complex
14c3x1lH_



96.1 16
PDB header:rna binding protein/rna/dna
Chain: H: PDB Molecule:cmr6;
PDBTitle: crystal structure of the crispr-cas rna silencing cmr complex bound to2 a target analog
15c4ilmH_



92.8 19
PDB header:hydrolase/rna
Chain: H: PDB Molecule:crispr-associated endoribonuclease cas6 2;
PDBTitle: crispr rna processing endoribonuclease
16c6fjwA_



84.2 28
PDB header:hydrolase
Chain: A: PDB Molecule:cas6 protein;
PDBTitle: streptococcus thermophilus cas6
17c4c97B_



67.7 18
PDB header:hydrolase
Chain: B: PDB Molecule:cas6a;
PDBTitle: cas6 (ttha0078) h37a mutant
18c4c9dA_



62.5 21
PDB header:hydrolase/rna
Chain: A: PDB Molecule:cas6b;
PDBTitle: cas6 (tthb231) product complex
19c3i4hX_



59.7 17
PDB header:hydrolase
Chain: X: PDB Molecule:endoribonuclease;
PDBTitle: crystal structure of cas6 in pyrococcus furiosus
20d1q0qa3



51.8 19
Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:Dihydrodipicolinate reductase-like
21c5kqoA_



not modelled 48.0 19
PDB header:oxidoreductase
Chain: A: PDB Molecule:1-deoxy-d-xylulose 5-phosphate reductoisomerase;
PDBTitle: 1-deoxy-d-xylulose 5-phosphate reductoisomerase from vibrio vulnificus
22c6dd5B_



not modelled 47.9 23
PDB header:hydrolase
Chain: B: PDB Molecule:mmb-1 cas6 fused to maltose binding protein,crispr-
PDBTitle: crystal structure of the cas6 domain of marinomonas mediterranea mmb-12 cas6-rt-cas1 fusion protein
23c2h5xA_



not modelled 47.2 15
PDB header:dna binding protein
Chain: A: PDB Molecule:holliday junction atp-dependent dna helicase ruva;
PDBTitle: ruva from mycobacterium tuberculosis
24c5yi6A_



not modelled 46.7 19
PDB header:hydrolase
Chain: A: PDB Molecule:crispr-associated endoribonuclease cas6 1;
PDBTitle: crispr associated protein cas6
25c2qtpA_



not modelled 42.2 36
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a duf1185 family protein (spo0826) from2 silicibacter pomeroyi dss-3 at 2.10 a resolution
26d2qtpa1



not modelled 42.2 36
Fold:Bacillus chorismate mutase-like
Superfamily:BB2672-like
Family:BB2672-like
27d3byqa1



not modelled 40.9 19
Fold:Bacillus chorismate mutase-like
Superfamily:BB2672-like
Family:BB2672-like
28c3au9A_



not modelled 40.8 17
PDB header:isomerase/isomerase inhibitor
Chain: A: PDB Molecule:1-deoxy-d-xylulose 5-phosphate reductoisomerase;
PDBTitle: crystal structure of the quaternary complex-1 of an isomerase
29c6ig0H_



not modelled 40.6 11
PDB header:rna binding protein
Chain: H: PDB Molecule:type iii-a crispr-associated ramp protein csm5;
PDBTitle: type iii-a csm complex, cryo-em structure of csm-ctr1, atp bound
30c2eghA_



not modelled 39.4 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:1-deoxy-d-xylulose 5-phosphate reductoisomerase;
PDBTitle: crystal structure of 1-deoxy-d-xylulose 5-phosphate reductoisomerase2 complexed with a magnesium ion, nadph and fosmidomycin
31c3qjjB_



not modelled 37.9 19
PDB header:immune system/rna
Chain: B: PDB Molecule:putative uncharacterized protein ph0350;
PDBTitle: one ramp protein binding different rna substrates
32d2b9da1



not modelled 30.3 18
Fold:E7 C-terminal domain-like
Superfamily:E7 C-terminal domain-like
Family:E7 C-terminal domain-like
33c6musF_



not modelled 29.2 15
PDB header:rna binding protein/rna
Chain: F: PDB Molecule:uncharacterized protein csm5;
PDBTitle: cryo-em structure of larger csm-crrna-target rna ternary complex in2 type iii-a crispr-cas system
34c6njyB_



not modelled 25.7 17
PDB header:rna binding protein
Chain: B: PDB Molecule:type iv crispr associated cas6 rna endonuclease;
PDBTitle: type iv crispr associated rna endonuclease cas6 - apo form
35c2jcyA_



not modelled 24.3 23
PDB header:oxidoreductase
Chain: A: PDB Molecule:1-deoxy-d-xylulose 5-phosphate reductoisomerase;
PDBTitle: x-ray structure of mutant 1-deoxy-d-xylulose 5-phosphate2 reductoisomerase, dxr, rv2870c, from mycobacterium tuberculosis
36c1d8lA_



not modelled 23.4 15
PDB header:gene regulation
Chain: A: PDB Molecule:protein (holliday junction dna helicase ruva);
PDBTitle: e. coli holliday junction binding protein ruva nh2 region lacking2 domain iii
37c5yzcB_



not modelled 23.3 22
PDB header:viral protein
Chain: B: PDB Molecule:glycoprotein f1,measles virus fusion protein;
PDBTitle: crystal structure of the prefusion form of measles virus fusion2 protein in complex with a fusion inhibitor compound (as-48)
38d2ewla1



not modelled 23.0 14
Fold:E7 C-terminal domain-like
Superfamily:E7 C-terminal domain-like
Family:E7 C-terminal domain-like
39c1ixrB_



not modelled 20.2 15
PDB header:hydrolase
Chain: B: PDB Molecule:holliday junction dna helicase ruva;
PDBTitle: ruva-ruvb complex
40c3j6vJ_



not modelled 18.7 16
PDB header:ribosome
Chain: J: PDB Molecule:28s ribosomal protein s10, mitochondrial;
PDBTitle: cryo-em structure of the small subunit of the mammalian mitochondrial2 ribosome
41c2v3mF_



not modelled 18.7 29
PDB header:ribosomal protein
Chain: F: PDB Molecule:naf1;
PDBTitle: structure of the gar1 domain of naf1
42c4ql6A_



not modelled 18.7 17
PDB header:hydrolase
Chain: A: PDB Molecule:carboxy-terminal processing protease;
PDBTitle: structure of c. trachomatis ct441
43c4z7lB_



not modelled 17.6 29
PDB header:hydrolase/rna
Chain: B: PDB Molecule:cas6b;
PDBTitle: crystal structure of cas6b
44c4w8xA_



not modelled 15.8 14
PDB header:rna binding protein
Chain: A: PDB Molecule:crispr system cmr subunit cmr1-1;
PDBTitle: crystal structure of cmr1 from pyrococcus furiosus bound to a2 nucleotide
45d2aw2a1



not modelled 14.6 16
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:V set domains (antibody variable domain-like)
46c3a14B_



not modelled 12.6 12
PDB header:oxidoreductase
Chain: B: PDB Molecule:1-deoxy-d-xylulose 5-phosphate reductoisomerase;
PDBTitle: crystal structure of dxr from thermotoga maritima, in complex with2 nadph
47c1hjpA_



not modelled 12.4 11
PDB header:dna recombination
Chain: A: PDB Molecule:ruva;
PDBTitle: holliday junction binding protein ruva from e. coli
48c3mgjA_



not modelled 12.4 13
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein mj1480;
PDBTitle: crystal structure of the saccharop_dh_n domain of mj1480 protein from2 methanococcus jannaschii. northeast structural genomics consortium3 target mjr83a.
49d1xaua_



not modelled 11.8 21
Fold:Immunoglobulin-like beta-sandwich
Superfamily:Immunoglobulin
Family:I set domains
50c1k5hB_



not modelled 10.3 16
PDB header:oxidoreductase
Chain: B: PDB Molecule:1-deoxy-d-xylulose-5-phosphate reductoisomerase;
PDBTitle: 1-deoxy-d-xylulose-5-phosphate reductoisomerase
51c2ovsB_



not modelled 9.3 14
PDB header:gene regulation, ligand binding protein
Chain: B: PDB Molecule:l0044;
PDBTitle: crystal strcuture of a type three secretion system protein
52c5hkqI_



not modelled 8.9 16
PDB header:toxin/antitoxin
Chain: I: PDB Molecule:cdii immunity protein;
PDBTitle: crystal structure of cdi complex from escherichia coli stec_o31
53d2gycf2



not modelled 8.9 39
Fold:MbtH/L9 domain-like
Superfamily:L9 N-domain-like
Family:Ribosomal protein L9 N-domain
54d1cqua_



not modelled 8.4 39
Fold:MbtH/L9 domain-like
Superfamily:L9 N-domain-like
Family:Ribosomal protein L9 N-domain
55d1f06a2



not modelled 7.1 28
Fold:FwdE/GAPDH domain-like
Superfamily:Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
Family:Dihydrodipicolinate reductase-like
56c3gqqD_



not modelled 6.8 15
PDB header:splicing
Chain: D: PDB Molecule:protein unc-119 homolog a;
PDBTitle: crystal structure of the human retinal protein 4 (unc-1192 homolog a). northeast structural genomics consortium3 target hr3066a
57c1ixrA_



not modelled 6.8 28
PDB header:hydrolase
Chain: A: PDB Molecule:holliday junction dna helicase ruva;
PDBTitle: ruva-ruvb complex
58c6iqsD_



not modelled 6.6 11
PDB header:hydrolase
Chain: D: PDB Molecule:tail-specific protease;
PDBTitle: crystal structure of prc with l245a and l340g mutations in complex2 with nlpi
59c1v1cA_



not modelled 6.5 47
PDB header:sh3-domain
Chain: A: PDB Molecule:obscurin;
PDBTitle: solution structure of the sh3 domain of obscurin
60c5mjrA_



not modelled 6.3 50
PDB header:photosynthesis
Chain: A: PDB Molecule:protein thf1;
PDBTitle: structure of psb29 at 1.55a
61d1k4na_



not modelled 6.3 8
Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
Family:Hypothetical protein YecM (EC4020)
62c1pnyF_



not modelled 6.2 39
PDB header:ribosome
Chain: F: PDB Molecule:50s ribosomal protein l9;
PDBTitle: crystal structure of the wild type ribosome from e. coli, 50s subunit2 of 70s ribosome. this file, 1pny, contains only molecules of the 50s3 ribosomal subunit. the 30s subunit is in the pdb file 1pnx.
63c3nvnA_



not modelled 6.1 18
PDB header:viral protein/signaling protein
Chain: A: PDB Molecule:evm139;
PDBTitle: molecular mechanism of guidance cue recognition
64d1nf1a_



not modelled 5.8 18
Fold:GTPase activation domain, GAP
Superfamily:GTPase activation domain, GAP
Family:p120GAP domain-like
65c4oe4A_



not modelled 5.7 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:delta-1-pyrroline-5-carboxylate dehydrogenase,
PDBTitle: crystal structure of yeast aldh4a1 complexed with nad+
66c5wqlC_



not modelled 5.2 11
PDB header:protein binding/signaling protein/hydrol
Chain: C: PDB Molecule:tail-specific protease;
PDBTitle: structure of a pdz-protease bound to a substrate-binding adaptor
67d1b74a1



not modelled 5.2 50
Fold:ATC-like
Superfamily:Aspartate/glutamate racemase
Family:Aspartate/glutamate racemase
68d1bf4a_



not modelled 5.2 11
Fold:SH3-like barrel
Superfamily:Chromo domain-like
Family:"Histone-like" proteins from archaea
69c2eqnA_



not modelled 5.0 29
PDB header:transcription
Chain: A: PDB Molecule:hypothetical protein loc92345;
PDBTitle: solution structure of the naf1 domain of hypothetical2 protein bc008207 [homo sapiens]

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