Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD2853_(PE_PGRS48)_3162278_3164125
DateWed Aug 7 12:50:52 BST 2019
Unique Job ID4557bd27d2db0468
SequenceMLYVVASPDL ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:40.590 Y:35.740 Z:52.677
Model (left) based on template c5xfsA_
Top template information
PDB header:protein transport
Chain: A: PDB Molecule:pe family protein pe8;
PDBTitle: crystal structure of pe8-ppe15 in complex with espg5 from m.2 tuberculosis
Confidence and coverage
Confidence:100.0% Coverage: 13%
78 residues ( 13% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
586 residues ( 95%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
Warning: 87% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.
3D viewing
Interactive 3D view in JSmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Download FASTA version

Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5xfsA_
100.0 46
PDB header:protein transport
Chain: A: PDB Molecule:pe family protein pe8;
PDBTitle: crystal structure of pe8-ppe15 in complex with espg5 from m.2 tuberculosis
2c2g38A_
100.0 34
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:pe family protein;
PDBTitle: a pe/ppe protein complex from mycobacterium tuberculosis
3d2g38a1
100.0 34
Fold:Ferritin-like
Superfamily:PE/PPE dimer-like
Family:PE
4c1ygvA_
99.9 59
PDB header:structural protein/contractile protein
Chain: A: PDB Molecule:collagen i alpha 1;
PDBTitle: the structure of collagen type i. single type i collagen2 molecule: rigid refinment
5c3hqvB_
99.9 29
PDB header:structural protein, contractile protein
Chain: B: PDB Molecule:collagen alpha-2(i) chain;
PDBTitle: low resolution, molecular envelope structure of type i2 collagen in situ determined by fiber diffraction. single3 type i collagen molecule, rigid body refinement
6c1y0fB_
99.8 26
PDB header:structural protein/contractile protein
Chain: B: PDB Molecule:collagen i alpha 2;
PDBTitle: the structure of collagen type i. single type i collagen2 molecule
7c3bogB_
97.8 39
PDB header:antifreeze protein
Chain: B: PDB Molecule:6.5 kda glycine-rich antifreeze protein;
PDBTitle: snow flea antifreeze protein quasi-racemate
8c3bogA_
97.8 39
PDB header:antifreeze protein
Chain: A: PDB Molecule:6.5 kda glycine-rich antifreeze protein;
PDBTitle: snow flea antifreeze protein quasi-racemate
9c2pneA_
97.6 38
PDB header:antifreeze protein
Chain: A: PDB Molecule:6.5 kda glycine-rich antifreeze protein;
PDBTitle: crystal structure of the snow flea antifreeze protein
10c3boiB_
97.6 38
PDB header:antifreeze protein
Chain: B: PDB Molecule:6.5 kda glycine-rich antifreeze protein;
PDBTitle: snow flea antifreeze protein racemate
11c3boiA_
97.6 38
PDB header:antifreeze protein
Chain: A: PDB Molecule:6.5 kda glycine-rich antifreeze protein;
PDBTitle: snow flea antifreeze protein racemate
12c5ctdB_
94.2 25
PDB header:structural protein
Chain: B: PDB Molecule:collagen alpha-2(i) chain,collagen alpha-2(ix) chain;
PDBTitle: crystal structure of the type ix collagen nc2 hetero-trimerization2 domain with a guest fragment a2a1a1 of type i collagen
13c1nayC_
93.9 25
PDB header:structural protein
Chain: C: PDB Molecule:collagen-like peptide;
PDBTitle: gpp-foldon:x-ray structure
14c5ctiC_
93.8 25
PDB header:structural protein
Chain: C: PDB Molecule:collagen alpha-1(i) chain,collagen alpha-3(ix) chain;
PDBTitle: crystal structure of the type ix collagen nc2 hetero-trimerization2 domain with a guest fragment a2a1a1 of type i collagen (native form)
15c5ctdA_
93.7 25
PDB header:structural protein
Chain: A: PDB Molecule:collagen alpha-1(i) chain,collagen alpha-1(ix) chain;
PDBTitle: crystal structure of the type ix collagen nc2 hetero-trimerization2 domain with a guest fragment a2a1a1 of type i collagen
16c3gvmA_
93.3 12
PDB header:viral protein
Chain: A: PDB Molecule:putative uncharacterized protein sag1039;
PDBTitle: structure of the homodimeric wxg-100 family protein from streptococcus2 agalactiae
17d1wa8a1
93.3 9
Fold:Ferritin-like
Superfamily:EsxAB dimer-like
Family:ESAT-6 like
18c4lwsA_
91.3 14
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: esxa : esxb (semet) hetero-dimer from thermomonospora curvata
19c4iogD_
90.8 10
PDB header:unknown function
Chain: D: PDB Molecule:secreted protein esxb;
PDBTitle: the crystal structure of a secreted protein esxb (wild-type, in p212 space group) from bacillus anthracis str. sterne
20c4wj2A_
87.9 13
PDB header:unknown function
Chain: A: PDB Molecule:antigen mtb48;
PDBTitle: mycobacterial protein
21c3zbhC_
not modelled 85.9 11
PDB header:unknown function
Chain: C: PDB Molecule:esxa;
PDBTitle: geobacillus thermodenitrificans esxa crystal form i
22c2vs0B_
not modelled 83.2 12
PDB header:cell invasion
Chain: B: PDB Molecule:virulence factor esxa;
PDBTitle: structural analysis of homodimeric staphylococcal aureus2 virulence factor esxa
23c2kg7B_
not modelled 81.6 13
PDB header:unknown function
Chain: B: PDB Molecule:esat-6-like protein esxh;
PDBTitle: structure and features of the complex formed by the tuberculosis2 virulence factors rv0287 and rv0288
24c2ml3A_
not modelled 80.9 23
PDB header:isomerase
Chain: A: PDB Molecule:poly(beta-d-mannuronate) c5 epimerase 6;
PDBTitle: solution structure of alge6r3 subunit from the azotobacter vinelandii2 mannuronan c5-epimerase
25c5szsC_
not modelled 75.2 22
PDB header:viral protein
Chain: C: PDB Molecule:spike glycoprotein;
PDBTitle: glycan shield and epitope masking of a coronavirus spike protein2 observed by cryo-electron microscopy
26c1k7qA_
not modelled 73.7 24
PDB header:hydrolase
Chain: A: PDB Molecule:secreted protease c;
PDBTitle: prtc from erwinia chrysanthemi: e189a mutant
27d1wa8b1
not modelled 71.4 15
Fold:Ferritin-like
Superfamily:EsxAB dimer-like
Family:ESAT-6 like
28c2ml2A_
not modelled 70.7 16
PDB header:isomerase
Chain: A: PDB Molecule:poly(beta-d-mannuronate) c5 epimerase 6;
PDBTitle: solution structure of alge6r2 subunit from the azotobacter vinelandii2 mannuronan c5-epimerase
29c6nb3B_
not modelled 68.9 22
PDB header:virus
Chain: B: PDB Molecule:spike glycoprotein;
PDBTitle: mers-cov complex with human neutralizing lca60 antibody fab fragment2 (state 1)
30c2klwA_
not modelled 66.5 33
PDB header:de novo protein
Chain: A: PDB Molecule:(pkg)10;
PDBTitle: solution structure of an abc collagen heterotrimer reveals a2 single-register helix stabilized by electrostatic3 interactions
31d1kapp1
not modelled 65.6 24
Fold:Single-stranded right-handed beta-helix
Superfamily:beta-Roll
Family:Serralysin-like metalloprotease, C-terminal domain
32d1k7ia1
not modelled 65.6 25
Fold:Single-stranded right-handed beta-helix
Superfamily:beta-Roll
Family:Serralysin-like metalloprotease, C-terminal domain
33c5x5fC_
not modelled 64.0 23
PDB header:viral protein
Chain: C: PDB Molecule:s protein;
PDBTitle: prefusion structure of mers-cov spike glycoprotein, conformation 2
34c3ah9D_
not modelled 62.4 41
PDB header:structural protein
Chain: D: PDB Molecule:collagen-like peptide;
PDBTitle: crystal structure of (pro-pro-gly)9 at 1.1 a resolution
35c1jiwP_
not modelled 60.4 24
PDB header:hydrolase/hyrolase inhibitor
Chain: P: PDB Molecule:alkaline metalloproteinase;
PDBTitle: crystal structure of the apr-aprin complex
36c2cuoC_
not modelled 59.8 37
PDB header:structural protein
Chain: C: PDB Molecule:collagen model peptide (pro-pro-gly)9;
PDBTitle: collagen model peptide (pro-pro-gly)9
37c2cuoF_
not modelled 59.8 37
PDB header:structural protein
Chain: F: PDB Molecule:collagen model peptide (pro-pro-gly)9;
PDBTitle: collagen model peptide (pro-pro-gly)9
38c2agmA_
not modelled 59.3 21
PDB header:isomerase
Chain: A: PDB Molecule:poly(beta-d-mannuronate) c5 epimerase 4;
PDBTitle: solution structure of the r-module from alge4
39c3ah9A_
not modelled 57.9 39
PDB header:structural protein
Chain: A: PDB Molecule:collagen-like peptide;
PDBTitle: crystal structure of (pro-pro-gly)9 at 1.1 a resolution
40c3ah9F_
not modelled 57.9 39
PDB header:structural protein
Chain: F: PDB Molecule:collagen-like peptide;
PDBTitle: crystal structure of (pro-pro-gly)9 at 1.1 a resolution
41c6b7nC_
not modelled 57.3 24
PDB header:viral protein
Chain: C: PDB Molecule:spike protein;
PDBTitle: cryo-electron microscopy structure of porcine delta coronavirus spike2 protein in the pre-fusion state
42c2w0cR_
not modelled 56.3 34
PDB header:virus
Chain: R: PDB Molecule:protein p3;
PDBTitle: x-ray structure of the entire lipid-containing bacteriophage pm2
43c3ah9C_
not modelled 55.1 39
PDB header:structural protein
Chain: C: PDB Molecule:collagen-like peptide;
PDBTitle: crystal structure of (pro-pro-gly)9 at 1.1 a resolution
44c3ah9B_
not modelled 55.1 39
PDB header:structural protein
Chain: B: PDB Molecule:collagen-like peptide;
PDBTitle: crystal structure of (pro-pro-gly)9 at 1.1 a resolution
45c3ah9E_
not modelled 55.1 39
PDB header:structural protein
Chain: E: PDB Molecule:collagen-like peptide;
PDBTitle: crystal structure of (pro-pro-gly)9 at 1.1 a resolution
46c5zhyA_
not modelled 53.9 14
PDB header:viral protein
Chain: A: PDB Molecule:spike glycoprotein, spike glycoprotein;
PDBTitle: structural characterization of the hcov-229e fusion core
47c5i08A_
not modelled 53.0 22
PDB header:viral protein
Chain: A: PDB Molecule:spike glycoprotein, envelope glycoprotein chimera;
PDBTitle: prefusion structure of a human coronavirus spike protein
48c3a0mF_
not modelled 52.9 39
PDB header:structural protein
Chain: F: PDB Molecule:collagen-like peptide;
PDBTitle: structure of (ppg)4-ovg-(ppg)4, monoclinic, twinned crystal
49c3jclC_
not modelled 51.7 25
PDB header:viral protein
Chain: C: PDB Molecule:spike glycoprotein;
PDBTitle: cryo-electron microscopy structure of a coronavirus spike glycoprotein2 trimer
50c2cuoD_
not modelled 51.6 39
PDB header:structural protein
Chain: D: PDB Molecule:collagen model peptide (pro-pro-gly)9;
PDBTitle: collagen model peptide (pro-pro-gly)9
51c2cuoB_
not modelled 51.6 39
PDB header:structural protein
Chain: B: PDB Molecule:collagen model peptide (pro-pro-gly)9;
PDBTitle: collagen model peptide (pro-pro-gly)9
52c2cuoE_
not modelled 51.6 39
PDB header:structural protein
Chain: E: PDB Molecule:collagen model peptide (pro-pro-gly)9;
PDBTitle: collagen model peptide (pro-pro-gly)9
53c2cuoA_
not modelled 51.6 39
PDB header:structural protein
Chain: A: PDB Molecule:collagen model peptide (pro-pro-gly)9;
PDBTitle: collagen model peptide (pro-pro-gly)9
54c6nzkB_
not modelled 51.3 21
PDB header:viral protein
Chain: B: PDB Molecule:spike surface glycoprotein;
PDBTitle: structural basis for human coronavirus attachment to sialic acid2 receptors
55c1satA_
not modelled 48.2 19
PDB header:hydrolase (serine protease)
Chain: A: PDB Molecule:serratia protease;
PDBTitle: crystal structure of the 50 kda metallo protease from s.2 marcescens
56c5x5bB_
not modelled 47.5 24
PDB header:viral protein
Chain: B: PDB Molecule:spike glycoprotein;
PDBTitle: prefusion structure of sars-cov spike glycoprotein, conformation 2
57c4z9cB_
not modelled 47.5 31
PDB header:transferase
Chain: B: PDB Molecule:subtilase cytotoxin subunit b-like protein;
PDBTitle: ecpltab oxidized
58c6cs2A_
not modelled 46.6 20
PDB header:viral protein/hydrolase
Chain: A: PDB Molecule:spike glycoprotein,fibritin;
PDBTitle: sars spike glycoprotein - human ace2 complex, stabilized variant, all2 ace2-bound particles
59c6b3oB_
not modelled 46.2 20
PDB header:viral protein
Chain: B: PDB Molecule:spike glycoprotein;
PDBTitle: tectonic conformational changes of a coronavirus spike glycoprotein2 promote membrane fusion
60c2zj6A_
not modelled 46.1 20
PDB header:hydrolase
Chain: A: PDB Molecule:lipase;
PDBTitle: crystal structure of d337a mutant of pseudomonas sp. mis38 lipase
61c1om8A_
not modelled 45.3 20
PDB header:hydrolase
Chain: A: PDB Molecule:serralysin;
PDBTitle: crystal structure of a cold adapted alkaline protease from pseudomonas2 tac ii 18, co-crystallyzed with 10 mm edta
62c5cxlA_
not modelled 39.5 23
PDB header:toxin
Chain: A: PDB Molecule:bifunctional hemolysin/adenylate cyclase;
PDBTitle: crystal structure of rtx domain block v of adenylate cyclase toxin2 from bordetella pertussis
63d1n7ka_
not modelled 38.8 16
Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
64c4lwsB_
not modelled 38.3 8
PDB header:unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: esxa : esxb (semet) hetero-dimer from thermomonospora curvata
65c1k6fA_
not modelled 37.6 36
PDB header:structural protein
Chain: A: PDB Molecule:collagen triple helix;
PDBTitle: crystal structure of the collagen triple helix model [(pro-pro-gly)2 10]3
66c1k6fD_
not modelled 37.6 36
PDB header:structural protein
Chain: D: PDB Molecule:collagen triple helix;
PDBTitle: crystal structure of the collagen triple helix model [(pro-pro-gly)2 10]3
67c1k6fC_
not modelled 37.6 36
PDB header:structural protein
Chain: C: PDB Molecule:collagen triple helix;
PDBTitle: crystal structure of the collagen triple helix model [(pro-pro-gly)2 10]3
68c1k6fB_
not modelled 37.6 36
PDB header:structural protein
Chain: B: PDB Molecule:collagen triple helix;
PDBTitle: crystal structure of the collagen triple helix model [(pro-pro-gly)2 10]3
69c1k6fF_
not modelled 37.6 36
PDB header:structural protein
Chain: F: PDB Molecule:collagen triple helix;
PDBTitle: crystal structure of the collagen triple helix model [(pro-pro-gly)2 10]3
70c1k6fE_
not modelled 37.6 36
PDB header:structural protein
Chain: E: PDB Molecule:collagen triple helix;
PDBTitle: crystal structure of the collagen triple helix model [(pro-pro-gly)2 10]3
71c2vsgB_
not modelled 34.1 15
PDB header:membrane protein
Chain: B: PDB Molecule:variant surface glycoprotein iltat 1.24;
PDBTitle: a structural motif in the variant surface glycoproteins of trypanosoma2 brucei
72c3v4cB_
not modelled 33.4 14
PDB header:oxidoreductase
Chain: B: PDB Molecule:aldehyde dehydrogenase (nadp+);
PDBTitle: crystal structure of a semialdehyde dehydrogenase from sinorhizobium2 meliloti 1021
73c2d1lA_
not modelled 33.2 14
PDB header:protein binding
Chain: A: PDB Molecule:metastasis suppressor protein 1;
PDBTitle: structure of f-actin binding domain imd of mim (missing in metastasis)
74c3onjA_
not modelled 32.9 21
PDB header:protein transport
Chain: A: PDB Molecule:t-snare vti1;
PDBTitle: crystal structure of yeast vti1p_habc domain
75c5fsgA_
not modelled 30.0 20
PDB header:viral protein
Chain: A: PDB Molecule:maltose-binding periplasmic protein, hantavirus
PDBTitle: structure of the hantavirus nucleoprotein provides insights2 into the mechanism of rna encapsidation and a template for3 drug design
76c5whvF_
not modelled 28.6 17
PDB header:toxin
Chain: F: PDB Molecule:artb protein;
PDBTitle: crystal structure of artb
77c4k6lC_
not modelled 28.1 28
PDB header:toxin
Chain: C: PDB Molecule:putative pertussis-like toxin subunit;
PDBTitle: structure of typhoid toxin
78c1mg1A_
not modelled 28.1 24
PDB header:viral protein
Chain: A: PDB Molecule:protein (htlv-1 gp21 ectodomain/maltose-binding protein
PDBTitle: htlv-1 gp21 ectodomain/maltose-binding protein chimera
79c3h6pB_
not modelled 28.0 63
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:esat-6 like protein esxs;
PDBTitle: crystal structure of rv3019c-rv3020c from mycobacterium tuberculosis
80c6cv0C_
not modelled 27.6 22
PDB header:viral protein
Chain: C: PDB Molecule:spike glycoprotein;
PDBTitle: cryo-electron microscopy structure of infectious bronchitis2 coronavirus spike protein
81c4kjsB_
not modelled 25.6 23
PDB header:transport protein
Chain: B: PDB Molecule:cation exchanger yfke;
PDBTitle: structure of native yfke
82c4rglA_
not modelled 24.4 23
PDB header:dna binding protein
Chain: A: PDB Molecule:filamentation induced by camp protein fic;
PDBTitle: crystal structure of a fic family protein (dde_2494) from2 desulfovibrio desulfuricans g20 at 2.70 a resolution
83c2qubG_
not modelled 24.2 21
PDB header:hydrolase
Chain: G: PDB Molecule:extracellular lipase;
PDBTitle: crystal structure of extracellular lipase lipa from serratia2 marcescens
84c5mgzA_
not modelled 22.8 29
PDB header:transferase
Chain: A: PDB Molecule:8-demethylnovobiocic acid c(8)-methyltransferase;
PDBTitle: streptomyces spheroides novo (8-demethylnovbiocic acid2 methyltransferase) with sah
85d2qtia1
not modelled 22.5 25
Fold:YejL-like
Superfamily:YejL-like
Family:YejL-like
86c6g7oA_
not modelled 21.1 15
PDB header:membrane protein
Chain: A: PDB Molecule:alkaline ceramidase 3,soluble cytochrome b562;
PDBTitle: crystal structure of human alkaline ceramidase 3 (acer3) at 2.72 angstrom resolution
87c5n7kD_
not modelled 20.8 28
PDB header:cell adhesion
Chain: D: PDB Molecule:marvel domain-containing protein 2;
PDBTitle: crystal structure of the coiled-coil domain of human tricellulin
88c5xlrC_
not modelled 20.3 24
PDB header:viral protein
Chain: C: PDB Molecule:spike glycoprotein;
PDBTitle: structure of sars-cov spike glycoprotein
89c2z8jA_
not modelled 19.8 13
PDB header:transferase
Chain: A: PDB Molecule:gamma-glutamyltranspeptidase;
PDBTitle: crystal structure of escherichia coli gamma-glutamyltranspeptidase in2 complex with azaserine prepared in the dark
90c2v8sV_
not modelled 19.4 13
PDB header:protein transport
Chain: V: PDB Molecule:vesicle transport through interaction with
PDBTitle: vti1b habc domain - epsinr enth domain complex
91c4gdxA_
not modelled 19.1 19
PDB header:hydrolase
Chain: A: PDB Molecule:gamma-glutamyltranspeptidase 1 heavy chain;
PDBTitle: crystal structure of human gamma-glutamyl transpeptidase--glutamate2 complex
92d1lghb_
not modelled 19.0 27
Fold:Light-harvesting complex subunits
Superfamily:Light-harvesting complex subunits
Family:Light-harvesting complex subunits
93c3w5mA_
not modelled 18.9 19
PDB header:hydrolase
Chain: A: PDB Molecule:putative rhamnosidase;
PDBTitle: crystal structure of streptomyces avermitilis alpha-l-rhamnosidase
94c4njlA_
not modelled 18.7 16
PDB header:viral protein
Chain: A: PDB Molecule:s protein;
PDBTitle: crystal structure of middle east respiratory syndrome coronavirus s22 protein fusion core
95c4c3sA_
not modelled 18.7 16
PDB header:oxidoreductase
Chain: A: PDB Molecule:aldehyde dehydrogenase;
PDBTitle: structure of a propionaldehyde dehydrogenase from the clostridium2 phytofermentans fucose utilisation bacterial microcompartment
96c2kg7A_
not modelled 18.6 20
PDB header:unknown function
Chain: A: PDB Molecule:uncharacterized protein esxg (pe family protein);
PDBTitle: structure and features of the complex formed by the tuberculosis2 virulence factors rv0287 and rv0288
97c4dbgB_
not modelled 18.5 18
PDB header:ligase
Chain: B: PDB Molecule:ring finger protein 31;
PDBTitle: crystal structure of hoil-1l-ubl complexed with a hoip-uba derivative
98c3abnA_
not modelled 18.4 38
PDB header:structural protein
Chain: A: PDB Molecule:collagen-like peptide;
PDBTitle: crystal structure of (pro-pro-gly)4-hyp-asp-gly-(pro-pro-gly)4 at 1.022 a
99c1gz3B_
not modelled 18.2 24
PDB header:oxidoreductase
Chain: B: PDB Molecule:nad-dependent malic enzyme, mitochondrial;
PDBTitle: molecular mechanism for the regulation of human mitochondrial nad(p)+-2 dependent malic enzyme by atp and fumarate

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite