Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3181c_(-)_3549688_3550140
DateThu Aug 8 16:20:37 BST 2019
Unique Job IDf853e45a6ac08ad8
SequenceMQLGRKVTSH ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:21.633 Y:23.128 Z:39.105
Model (left) based on template c2odkD_
Top template information
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:hypothetical protein;
PDBTitle: putative prevent-host-death protein from nitrosomonas europaea
Confidence and coverage
Confidence: 99.1% Coverage: 31%
47 residues ( 31% of your sequence) have been modelled with 99.1% confidence by the single highest scoring template.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2odkD_
99.1 23
PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:hypothetical protein;
PDBTitle: putative prevent-host-death protein from nitrosomonas europaea
2d2odka1
99.1 24
Fold:YefM-like
Superfamily:YefM-like
Family:YefM-like
3c3hryA_
98.7 23
PDB header:antitoxin
Chain: A: PDB Molecule:prevent host death protein;
PDBTitle: crystal structure of phd in a trigonal space group and partially2 disordered
4c3hs2H_
98.7 27
PDB header:antitoxin
Chain: H: PDB Molecule:prevent host death protein;
PDBTitle: crystal structure of phd truncated to residue 57 in an orthorhombic2 space group
5d2a6qb1
98.2 26
Fold:YefM-like
Superfamily:YefM-like
Family:YefM-like
6c3g5oA_
98.1 22
PDB header:toxin/antitoxin
Chain: A: PDB Molecule:uncharacterized protein rv2865;
PDBTitle: the crystal structure of the toxin-antitoxin complex relbe2 (rv2865-2 2866) from mycobacterium tuberculosis
7d2a6qa1
97.8 26
Fold:YefM-like
Superfamily:YefM-like
Family:YefM-like
8c3d55A_
97.6 26
PDB header:toxin inhibitor
Chain: A: PDB Molecule:uncharacterized protein rv3357/mt3465;
PDBTitle: crystal structure of m. tuberculosis yefm antitoxin
9c3oeiB_
97.6 26
PDB header:toxin, protein binding
Chain: B: PDB Molecule:relj (antitoxin rv3357);
PDBTitle: crystal structure of mycobacterium tuberculosis reljk (rv3357-rv3358-2 relbe3)
10c3k6qB_
78.0 14
PDB header:ligand binding protein
Chain: B: PDB Molecule:putative ligand binding protein;
PDBTitle: crystal structure of an antitoxin part of a putative toxin/antitoxin2 system (swol_0700) from syntrophomonas wolfei subsp. wolfei at 1.80 a3 resolution
11c1skoA_
68.3 22
PDB header:signaling protein
Chain: A: PDB Molecule:mitogen-activated protein kinase kinase 1
PDBTitle: mp1-p14 complex
12d3cpta1
58.2 21
Fold:Profilin-like
Superfamily:Roadblock/LC7 domain
Family:Roadblock/LC7 domain
13d1p2za2
37.0 35
Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:Group II dsDNA viruses VP
Family:Adenovirus hexon
14c2bviK_
26.4 35
PDB header:virus
Chain: K: PDB Molecule:hexon protein;
PDBTitle: the quasi-atomic model of human adenovirus type 52 capsid (part 2)
15c3zifD_
26.2 35
PDB header:virus
Chain: D: PDB Molecule:hexon protein;
PDBTitle: cryo-em structures of two intermediates provide insight into2 adenovirus assembly and disassembly
16d2ns0a1
24.8 36
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:RHA1 ro06458-like
17d1ogda_
24.3 30
Fold:RbsD-like
Superfamily:RbsD-like
Family:RbsD-like
18c2wcvI_
22.0 19
PDB header:isomerase
Chain: I: PDB Molecule:l-fucose mutarotase;
PDBTitle: crystal structure of bacterial fucu
19c4zdtB_
21.6 27
PDB header:hydrolase
Chain: B: PDB Molecule:structure-specific endonuclease subunit slx4;
PDBTitle: crystal structure of the ring finger domain of slx1 in complex with2 the c-terminal domain of slx4
20c3e7nB_
21.2 26
PDB header:transport protein
Chain: B: PDB Molecule:d-ribose high-affinity transport system;
PDBTitle: crystal structure of d-ribose high-affinity transport system from2 salmonella typhimurium lt2
21c3p13B_
not modelled 20.0 26
PDB header:isomerase
Chain: B: PDB Molecule:d-ribose pyranase;
PDBTitle: complex structure of d-ribose pyranase sa240 with d-ribose
22c2wcuB_
not modelled 18.9 30
PDB header:isomerase
Chain: B: PDB Molecule:protein fucu homolog;
PDBTitle: crystal structure of mammalian fucu
23c4a34L_
not modelled 18.1 23
PDB header:isomerase
Chain: L: PDB Molecule:rbsd/fucu transport protein family protein;
PDBTitle: crystal structure of the fucose mutarotase in complex with2 l-fucose from streptococcus pneumoniae
24c3mvkA_
not modelled 16.9 23
PDB header:isomerase
Chain: A: PDB Molecule:protein fucu;
PDBTitle: the crystal structure of fucu from bifidobacterium longum to 1.65a
25c4v0bA_
not modelled 15.7 19
PDB header:hydrolase
Chain: A: PDB Molecule:atp-dependent zinc metalloprotease ftsh;
PDBTitle: escherichia coli ftsh hexameric n-domain
26d2ob5a1
not modelled 15.7 27
Fold:RbsD-like
Superfamily:RbsD-like
Family:RbsD-like
27d2ve8a1
not modelled 14.6 16
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:FtsK C-terminal domain-like
28c2muyA_
not modelled 14.4 15
PDB header:nucleotide binding protein
Chain: A: PDB Molecule:atp-dependent zinc metalloprotease ftsh;
PDBTitle: the solution structure of the ftsh periplasmic n-domain
29d1x6va1
not modelled 14.0 15
Fold:PUA domain-like
Superfamily:PUA domain-like
Family:ATP sulfurylase N-terminal domain
30d2j5pa1
not modelled 13.0 16
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:FtsK C-terminal domain-like
31c5ax7A_
not modelled 12.8 27
PDB header:transferase
Chain: A: PDB Molecule:pyruvyl transferase 1;
PDBTitle: yeast pyruvyltransferase pvg1p
32c2inyA_
not modelled 12.3 33
PDB header:viral protein
Chain: A: PDB Molecule:hexon protein;
PDBTitle: nanoporous crystals of chicken embryo lethal orphan (celo) adenovirus2 major coat protein, hexon
33d1p94a_
not modelled 12.2 27
Fold:Ribbon-helix-helix
Superfamily:Ribbon-helix-helix
Family:CopG-like
34c1gk7A_
not modelled 11.0 24
PDB header:vimentin
Chain: A: PDB Molecule:vimentin;
PDBTitle: human vimentin coil 1a fragment (1a)
35c3tuoA_
not modelled 10.8 25
PDB header:dna binding protein
Chain: A: PDB Molecule:dna-binding protein satb1;
PDBTitle: crystal structure of n-terminal domain of dna-binding protein satb1
36c4heoA_
not modelled 10.8 50
PDB header:viral protein
Chain: A: PDB Molecule:phosphoprotein;
PDBTitle: hendra virus phosphoprotein c terminal domain
37c4jj0B_
not modelled 10.7 10
PDB header:electron transport
Chain: B: PDB Molecule:mamp;
PDBTitle: crystal structure of mamp
38d2hq7a1
not modelled 10.6 9
Fold:Split barrel-like
Superfamily:FMN-binding split barrel
Family:PNP-oxidase like
39c6f9gE_
not modelled 10.4 16
PDB header:signaling protein
Chain: E: PDB Molecule:methyl-accepting chemotaxis protein mcpu;
PDBTitle: ligand binding domain of p. putida kt2440 polyamine chemorecpetors2 mcpu in complex putrescine.
40c2vm2C_
not modelled 9.7 10
PDB header:oxidoreductase
Chain: C: PDB Molecule:thioredoxin h isoform 1.;
PDBTitle: crystal structure of barley thioredoxin h isoform 1 crystallized using2 peg as precipitant
41c5flvA_
not modelled 9.1 22
PDB header:transcription
Chain: A: PDB Molecule:homeobox protein nkx-2.5, t-box transcription factor tbx5;
PDBTitle: crystal structure of nkx2-5 and tbx5 bound to the nppa2 promoter region
42c5lddA_
not modelled 8.7 30
PDB header:protein transport
Chain: A: PDB Molecule:mon1;
PDBTitle: crystal structure of the heterodimeric gef mon1-ccz1 in complex with2 ypt7
43d1y8xb1
not modelled 8.5 25
Fold:Activating enzymes of the ubiquitin-like proteins
Superfamily:Activating enzymes of the ubiquitin-like proteins
Family:Ubiquitin activating enzymes (UBA)
44c5yadA_
not modelled 8.4 25
PDB header:rna binding protein
Chain: A: PDB Molecule:meiosis regulator and mrna stability factor 1;
PDBTitle: crystal structure of marf1 lotus domain from mus musculus
45d1f8fa2
not modelled 8.3 11
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Alcohol dehydrogenase-like, C-terminal domain
46c5zf2A_
not modelled 8.1 14
PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin (h-type,trx-h);
PDBTitle: crystal structure of trxlp from edwardsiella tarda eib202
47c3v62C_
not modelled 8.0 50
PDB header:protein binding/dna binding protein
Chain: C: PDB Molecule:atp-dependent dna helicase srs2;
PDBTitle: structure of the s. cerevisiae srs2 c-terminal domain in complex with2 pcna conjugated to sumo on lysine 164
48c3v62F_
not modelled 8.0 50
PDB header:protein binding/dna binding protein
Chain: F: PDB Molecule:atp-dependent dna helicase srs2;
PDBTitle: structure of the s. cerevisiae srs2 c-terminal domain in complex with2 pcna conjugated to sumo on lysine 164
49c5u1sA_
not modelled 8.0 22
PDB header:hydrolase
Chain: A: PDB Molecule:separin;
PDBTitle: crystal structure of the saccharomyces cerevisiae separase-securin2 complex at 3.0 angstrom resolution
50c4cgbE_
not modelled 7.9 37
PDB header:cell cycle
Chain: E: PDB Molecule:echinoderm microtubule-associated protein-like 2;
PDBTitle: crystal structure of the trimerization domain of eml2
51c3s4rB_
not modelled 7.7 24
PDB header:structural protein
Chain: B: PDB Molecule:vimentin;
PDBTitle: crystal structure of vimentin coil1a/1b fragment with a stabilizing2 mutation
52c1u2zC_
not modelled 7.5 18
PDB header:transferase
Chain: C: PDB Molecule:histone-lysine n-methyltransferase, h3 lysine-79
PDBTitle: crystal structure of histone k79 methyltransferase dot1p2 from yeast
53d1u2za_
not modelled 7.3 15
Fold:S-adenosyl-L-methionine-dependent methyltransferases
Superfamily:S-adenosyl-L-methionine-dependent methyltransferases
Family:Catalytic, N-terminal domain of histone methyltransferase Dot1l
54c3ssmB_
not modelled 7.0 25
PDB header:transferase
Chain: B: PDB Molecule:methyltransferase;
PDBTitle: myce methyltransferase from the mycinamycin biosynthetic pathway in2 complex with mg and sah, crystal form 1
55c4cgbA_
not modelled 6.8 37
PDB header:cell cycle
Chain: A: PDB Molecule:echinoderm microtubule-associated protein-like 2;
PDBTitle: crystal structure of the trimerization domain of eml2
56c2nr1A_
not modelled 6.8 33
PDB header:receptor
Chain: A: PDB Molecule:nr1 m2;
PDBTitle: transmembrane segment 2 of nmda receptor nr1, nmr, 102 structures
57c5jieE_
not modelled 6.7 18
PDB header:viral protein
Chain: E: PDB Molecule:protein delta;
PDBTitle: crystal structure of the orsay virus delta protein n-terminal fragment2 (aa 1~66)
58c3louB_
not modelled 6.7 17
PDB header:hydrolase
Chain: B: PDB Molecule:formyltetrahydrofolate deformylase;
PDBTitle: crystal structure of formyltetrahydrofolate deformylase (yp_105254.1)2 from burkholderia mallei atcc 23344 at 1.90 a resolution
59c4euyA_
not modelled 6.5 28
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of thioredoxin-like protein bce_0499 from bacillus2 cereus atcc 10987
60c1b9xC_
not modelled 6.4 16
PDB header:signaling protein
Chain: C: PDB Molecule:protein (phosducin);
PDBTitle: structural analysis of phosducin and its phosphorylation-2 regulated interaction with transducin
61c2htfA_
not modelled 6.4 33
PDB header:transferase
Chain: A: PDB Molecule:dna polymerase mu;
PDBTitle: the solution structure of the brct domain from human2 polymerase reveals homology with the tdt brct domain
62d1g8fa1
not modelled 6.3 19
Fold:PUA domain-like
Superfamily:PUA domain-like
Family:ATP sulfurylase N-terminal domain
63c2qsiB_
not modelled 6.3 3
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:putative hydrogenase expression/formation protein hupg;
PDBTitle: crystal structure of putative hydrogenase expression/formation protein2 hupg from rhodopseudomonas palustris cga009
64c2wtoB_
not modelled 6.2 17
PDB header:metal binding protein
Chain: B: PDB Molecule:orf131 protein;
PDBTitle: crystal structure of apo-form czce from c. metallidurans ch34
65d1t3ta7
not modelled 6.1 25
Fold:PurM C-terminal domain-like
Superfamily:PurM C-terminal domain-like
Family:PurM C-terminal domain-like
66c2jvzA_
not modelled 6.1 15
PDB header:splicing
Chain: A: PDB Molecule:far upstream element-binding protein 2;
PDBTitle: solution nmr structure of the second and third kh domains2 of ksrp
67c2p22D_
not modelled 6.0 10
PDB header:transport protein
Chain: D: PDB Molecule:hypothetical 12.0 kda protein in ade3-ser2 intergenic
PDBTitle: structure of the yeast escrt-i heterotetramer core
68c4ewvB_
not modelled 6.0 22
PDB header:ligase
Chain: B: PDB Molecule:4-substituted benzoates-glutamate ligase gh3.12;
PDBTitle: crystal structure of gh3.12 in complex with ampcpp
69c5uc2C_
not modelled 5.9 24
PDB header:hydrolase
Chain: C: PDB Molecule:domain of unknown function duf1849;
PDBTitle: crystal structure of beta-barrel-like, putative atp binding protein of2 domain of unknown function duf1849 from brucella abortus
70c2pptA_
not modelled 5.9 17
PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin-2;
PDBTitle: crystal structure of thioredoxin-2
71d2ff4a1
not modelled 5.8 18
Fold:DNA/RNA-binding 3-helical bundle
Superfamily:C-terminal effector domain of the bipartite response regulators
Family:PhoB-like
72d2g50a3
not modelled 5.8 13
Fold:Pyruvate kinase C-terminal domain-like
Superfamily:PK C-terminal domain-like
Family:Pyruvate kinase, C-terminal domain
73c3f1iH_
not modelled 5.6 17
PDB header:protein binding
Chain: H: PDB Molecule:hepatocyte growth factor-regulated tyrosine kinase
PDBTitle: human escrt-0 core complex
74d1pkma1
not modelled 5.6 10
Fold:PK beta-barrel domain-like
Superfamily:PK beta-barrel domain-like
Family:Pyruvate kinase beta-barrel domain
75c4q2jA_
not modelled 5.5 28
PDB header:dna binding protein
Chain: A: PDB Molecule:dna-binding protein satb1;
PDBTitle: a novel structure-based mechanism for dna-binding of satb1
76d1umka1
not modelled 5.4 17
Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Riboflavin synthase domain-like
Family:Ferredoxin reductase FAD-binding domain-like
77c4fxjB_
not modelled 5.4 13
PDB header:transferase
Chain: B: PDB Molecule:pyruvate kinase isozymes m1/m2;
PDBTitle: structure of m2 pyruvate kinase in complex with phenylalanine
78d1qx4a1
not modelled 5.3 12
Fold:Reductase/isomerase/elongation factor common domain
Superfamily:Riboflavin synthase domain-like
Family:Ferredoxin reductase FAD-binding domain-like
79d2jhfa2
not modelled 5.3 9
Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Alcohol dehydrogenase-like, C-terminal domain
80c1vjqB_
not modelled 5.3 41
PDB header:structural genomics, de novo protein
Chain: B: PDB Molecule:designed protein;
PDBTitle: designed protein based on backbone conformation of2 procarboxypeptidase-a (1aye) with sidechains chosen for maximal3 predicted stability.
81c1v98A_
not modelled 5.2 24
PDB header:oxidoreductase
Chain: A: PDB Molecule:thioredoxin;
PDBTitle: crystal structure analysis of thioredoxin from thermus thermophilus
82c5vf0B_
not modelled 5.1 24
PDB header:transferase
Chain: B: PDB Molecule:e3 ubiquitin-protein ligase rad18;
PDBTitle: solution nmr structure of human rad18 (198-240) in complex with2 ubiquitin
83c5w82E_
not modelled 5.0 19
PDB header:viral protein
Chain: E: PDB Molecule:protein delta;
PDBTitle: crystal structure of orsay virus delta protein n-terminal fragment (aa2 1-101)
84c3o6uB_
not modelled 5.0 13
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein cpe2226;
PDBTitle: crystal structure of cpe2226 protein from clostridium perfringens.2 northeast structural genomics consortium target cpr195

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