Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3686c_(-)_4128929_4129261
DateFri Aug 9 18:20:37 BST 2019
Unique Job ID4aa35d72de07bd1b
SequenceMVYTGSDAGD ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:10.442 Y:12.787 Z:24.320
Model (left) based on template c5xnmj_
Top template information
PDB header:membrane protein
Chain: J: PDB Molecule:photosystem ii reaction center protein j;
PDBTitle: structure of unstacked c2s2m2-type psii-lhcii supercomplex from pisum2 sativum
Confidence and coverage
Confidence: 36.5% Coverage: 14%
15 residues ( 14% of your sequence) have been modelled with 36.5% confidence by the single highest scoring template.
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3D viewing
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5xnmj_
36.5 40
PDB header:membrane protein
Chain: J: PDB Molecule:photosystem ii reaction center protein j;
PDBTitle: structure of unstacked c2s2m2-type psii-lhcii supercomplex from pisum2 sativum
2d2i8ga1
25.0 44
Fold:Mog1p/PsbP-like
Superfamily:Mog1p/PsbP-like
Family:DIP2269-like
3c3jcuj_
22.9 33
PDB header:membrane protein
Chain: J: PDB Molecule:photosystem ii reaction center protein j;
PDBTitle: cryo-em structure of spinach psii-lhcii supercomplex at 3.2 angstrom2 resolution
4d2axtj1
21.0 40
Fold:Single transmembrane helix
Superfamily:Photosystem II reaction center protein J, PsbJ
Family:PsbJ-like
5c3a0hJ_
21.0 40
PDB header:electron transport
Chain: J: PDB Molecule:photosystem ii reaction center protein j;
PDBTitle: crystal structure of i-substituted photosystem ii complex
6c4d6uI_
13.2 53
PDB header:oxidoreductase
Chain: I: PDB Molecule:cytochrome b-c1 complex subunit rieske, mitochondrial;
PDBTitle: cytochrome bc1 bound to the 4(1h)-pyridone gsk932121
7c2e76G_
9.2 61
PDB header:photosynthesis
Chain: G: PDB Molecule:cytochrome b6-f complex subunit 5;
PDBTitle: crystal structure of the cytochrome b6f complex with tridecyl-2 stigmatellin (tds) from m.laminosus
8c1xopA_
8.8 50
PDB header:viral protein
Chain: A: PDB Molecule:hemagglutinin;
PDBTitle: nmr structure of g1v mutant of influenza hemagglutinin2 fusion peptide in dpc micelles at ph 5
9c1xooA_
8.7 50
PDB header:viral protein
Chain: A: PDB Molecule:hemagglutinin;
PDBTitle: nmr structure of g1s mutant of influenza hemagglutinin2 fusion peptide in dpc micelles at ph 5
10c2yueA_
8.6 32
PDB header:rna binding protein
Chain: A: PDB Molecule:protein neuralized;
PDBTitle: solution structure of the neuz (nhr) domain in neuralized2 from drosophila melanogaster
11c5oeoC_
8.0 50
PDB header:membrane protein
Chain: C: PDB Molecule:transient receptor potential cation channel subfamily v
PDBTitle: solution structure of the complex of trpv5(655-725) with a calmodulin2 e32q/e68q double mutant
12c2jrdA_
8.0 50
PDB header:viral protein
Chain: A: PDB Molecule:hemagglutinin;
PDBTitle: influenza hemagglutinin fusion domain mutant f9a
13c3rnvA_
7.8 38
PDB header:hydrolase
Chain: A: PDB Molecule:helper component proteinase;
PDBTitle: structure of the autocatalytic cysteine protease domain of potyvirus2 helper-component proteinase
14c2qm2B_
7.8 50
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:putative hopj type iii effector protein;
PDBTitle: putative hopj type iii effector protein from vibrio parahaemolyticus
15c4qh0D_
7.7 25
PDB header:hydrolase
Chain: D: PDB Molecule:dna-entry nuclease (competence-specific nuclease);
PDBTitle: crystal structure of nuca from streptococcus agalactiae with magnesium2 ion bound
16c6n1bA_
7.5 30
PDB header:hydrolase
Chain: A: PDB Molecule:carbohydrate-binding protein;
PDBTitle: crystal structure of an n-acetylgalactosamine deacetylase from f.2 plautii in complex with blood group b trisaccharide
17c4zsfA_
7.2 50
PDB header:protein/dna
Chain: A: PDB Molecule:bsawi endonuclease;
PDBTitle: crystal structure of pre-specific restriction endonuclease bsawi-dna2 complex
18c1ibnA_
7.1 50
PDB header:viral protein
Chain: A: PDB Molecule:hemagglutinin ha2 chain peptide;
PDBTitle: nmr structure of hemagglutinin fusion peptide in dpc2 micelles at ph 5
19c1iboA_
7.1 50
PDB header:viral protein
Chain: A: PDB Molecule:hemagglutinin ha2 chain peptide;
PDBTitle: nmr structure of hemagglutinin fusion peptide in dpc2 micelles at ph 7.4
20d2f3ci1
6.8 83
Fold:Kazal-type serine protease inhibitors
Superfamily:Kazal-type serine protease inhibitors
Family:Ovomucoid domain III-like
21c5klvI_
not modelled 6.3 58
PDB header:oxidoreductase
Chain: I: PDB Molecule:cytochrome b-c1 complex subunit rieske, mitochondrial;
PDBTitle: structure of bos taurus cytochrome bc1 with fenamidone inhibited
22c3g05B_
not modelled 5.4 48
PDB header:rna binding protein
Chain: B: PDB Molecule:trna uridine 5-carboxymethylaminomethyl modification enzyme
PDBTitle: crystal structure of n-terminal domain (2-550) of e.coli mnmg
23d1hc7a3
not modelled 5.3 29
Fold:IF3-like
Superfamily:C-terminal domain of ProRS
Family:C-terminal domain of ProRS

Binding site prediction 

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Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below