Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3752c_(-)_4199425_4199883
DateFri Aug 9 18:20:45 BST 2019
Unique Job ID622e20fae08c122c
SequenceVTTDEDLIRA ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:38.052 Y:38.076 Z:46.766
Model (left) based on template c2nx8A_
Top template information
PDB header:hydrolase
Chain: A: PDB Molecule:trna-specific adenosine deaminase;
PDBTitle: the crystal structure of the trna-specific adenosine deaminase from2 streptococcus pyogenes
Confidence and coverage
Confidence:100.0% Coverage: 97%
148 residues ( 97% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
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Sequence analysis 

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#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2nx8A_



100.0 40
PDB header:hydrolase
Chain: A: PDB Molecule:trna-specific adenosine deaminase;
PDBTitle: the crystal structure of the trna-specific adenosine deaminase from2 streptococcus pyogenes
2d2b3ja1



100.0 46
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Deoxycytidylate deaminase-like
3d1z3aa1



100.0 48
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Deoxycytidylate deaminase-like
4c3ocqA_



100.0 50
PDB header:hydrolase
Chain: A: PDB Molecule:putative cytosine/adenosine deaminase;
PDBTitle: crystal structure of trna-specific adenosine deaminase from salmonella2 enterica
5d1wwra1



100.0 40
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Deoxycytidylate deaminase-like
6c3dh1D_



100.0 27
PDB header:hydrolase
Chain: D: PDB Molecule:trna-specific adenosine deaminase 2;
PDBTitle: crystal structure of human trna-specific adenosine-34 deaminase2 subunit adat2
7d2g84a1



100.0 26
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Deoxycytidylate deaminase-like
8d1p6oa_



100.0 29
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Deoxycytidylate deaminase-like
9c5xkrA_



100.0 27
PDB header:hydrolase
Chain: A: PDB Molecule:cmp/dcmp deaminase, zinc-binding protein;
PDBTitle: crystal structure of msmeg3575 in complex with benzoguanamine
10d2a8na1



100.0 44
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Deoxycytidylate deaminase-like
11d2b3za2



100.0 31
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Deoxycytidylate deaminase-like
12c2d5nB_



100.0 32
PDB header:hydrolase, oxidoreductase
Chain: B: PDB Molecule:riboflavin biosynthesis protein ribd;
PDBTitle: crystal structure of a bifunctional deaminase and reductase2 involved in riboflavin biosynthesis
13c3zpgA_



100.0 28
PDB header:hydrolase
Chain: A: PDB Molecule:ribd;
PDBTitle: acinetobacter baumannii ribd, form 2
14c2o7pA_



100.0 33
PDB header:hydrolase, oxidoreductase
Chain: A: PDB Molecule:riboflavin biosynthesis protein ribd;
PDBTitle: the crystal structure of ribd from escherichia coli in complex with2 the oxidised nadp+ cofactor in the active site of the reductase3 domain
15c2hxvA_



100.0 31
PDB header:biosynthetic protein
Chain: A: PDB Molecule:diaminohydroxyphosphoribosylaminopyrimidine deaminase/ 5-
PDBTitle: crystal structure of a diaminohydroxyphosphoribosylaminopyrimidine2 deaminase/ 5-amino-6-(5-phosphoribosylamino)uracil reductase (tm1828)3 from thermotoga maritima at 1.80 a resolution
16d2hxva2



100.0 21
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Deoxycytidylate deaminase-like
17d1wkqa_



100.0 30
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Deoxycytidylate deaminase-like
18c2w4lC_



100.0 18
PDB header:hydrolase
Chain: C: PDB Molecule:deoxycytidylate deaminase;
PDBTitle: human dcmp deaminase
19c5jfyC_



100.0 35
PDB header:hydrolase
Chain: C: PDB Molecule:deoxycytidine deaminase;
PDBTitle: crystal structure of a plant cytidine deaminase
20c2hvwC_



100.0 23
PDB header:hydrolase
Chain: C: PDB Molecule:deoxycytidylate deaminase;
PDBTitle: crystal structure of dcmp deaminase from streptococcus mutans
21c4p9eA_



not modelled 100.0 25
PDB header:hydrolase
Chain: A: PDB Molecule:deoxycytidylate deaminase;
PDBTitle: crystal structure of dcmp deaminase from the cyanophage s-tim5 in apo2 form
22d1vq2a_



not modelled 100.0 29
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Deoxycytidylate deaminase-like
23d1uwza_



not modelled 98.5 23
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Cytidine deaminase
24c3b8fB_



not modelled 98.5 14
PDB header:hydrolase
Chain: B: PDB Molecule:putative blasticidin s deaminase;
PDBTitle: crystal structure of the cytidine deaminase from bacillus anthracis
25d1mq0a_



not modelled 98.5 18
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Cytidine deaminase
26d1r5ta_



not modelled 98.4 17
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Cytidine deaminase
27d2fr5a1



not modelled 98.4 18
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Cytidine deaminase
28d2d30a1



not modelled 98.4 20
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Cytidine deaminase
29c3dmoD_



not modelled 98.4 22
PDB header:hydrolase
Chain: D: PDB Molecule:cytidine deaminase;
PDBTitle: 1.6 a crystal structure of cytidine deaminase from burkholderia2 pseudomallei
30c3ijfX_



not modelled 98.2 24
PDB header:hydrolase
Chain: X: PDB Molecule:cytidine deaminase;
PDBTitle: crystal structure of cytidine deaminase from mycobacterium2 tuberculosis
31c4eg2G_



not modelled 98.2 16
PDB header:hydrolase
Chain: G: PDB Molecule:cytidine deaminase;
PDBTitle: 2.2 angstrom crystal structure of cytidine deaminase from vibrio2 cholerae in complex with zinc and uridine
32d1alna1



not modelled 98.2 27
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Cytidine deaminase
33c3r2nC_



not modelled 98.2 25
PDB header:hydrolase
Chain: C: PDB Molecule:cytidine deaminase;
PDBTitle: crystal structure of cytidine deaminase from mycobacterium leprae
34d1alna2



not modelled 98.1 21
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Cytidine deaminase
35c1alnA_



not modelled 98.0 20
PDB header:hydrolase
Chain: A: PDB Molecule:cytidine deaminase;
PDBTitle: crystal structure of cytidine deaminase complexed with 3-deazacytidine
36d2z3ga1



not modelled 97.8 17
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:Cytidine deaminase
37c3oj6C_



not modelled 97.7 20
PDB header:hydrolase
Chain: C: PDB Molecule:blasticidin-s deaminase;
PDBTitle: crystal structure of blasticidin s deaminase from coccidioides immitis
38c3vowB_



not modelled 95.5 19
PDB header:hydrolase
Chain: B: PDB Molecule:probable dna dc->du-editing enzyme apobec-3c;
PDBTitle: crystal structure of the human apobec3c having hiv-1 vif-binding2 interface
39c3g8qA_



not modelled 95.1 34
PDB header:rna binding protein
Chain: A: PDB Molecule:predicted rna-binding protein, contains thump
PDBTitle: a cytidine deaminase edits c-to-u in transfer rnas in2 archaea
40c5tkmA_



not modelled 94.9 21
PDB header:hydrolase
Chain: A: PDB Molecule:dna dc->du-editing enzyme apobec-3b;
PDBTitle: crystal structure of human apobec3b n-terminal domain
41c5k83C_



not modelled 94.8 19
PDB header:hydrolase
Chain: C: PDB Molecule:apolipoprotein b mrna editing enzyme, catalytic peptide-
PDBTitle: crystal structure of a primate apobec3g n-domain, in complex with2 ssdna
42c6b0bE_



not modelled 92.3 21
PDB header:hydrolase/rna
Chain: E: PDB Molecule:apobec3h;
PDBTitle: crystal structure of human apobec3h
43c2mzzA_



not modelled 91.9 21
PDB header:hydrolase, antiviral protein
Chain: A: PDB Molecule:apolipoprotein b mrna-editing enzyme, catalytic
PDBTitle: nmr structure of apobec3g ntd variant, sntd
44c2kboA_



not modelled 90.8 19
PDB header:hydrolase
Chain: A: PDB Molecule:dna dc->du-editing enzyme apobec-3g;
PDBTitle: structure, interaction, and real-time monitoring of the2 enzymatic reaction of wild type apobec3g
45c2nytB_



not modelled 88.1 26
PDB header:hydrolase
Chain: B: PDB Molecule:probable c->u-editing enzyme apobec-2;
PDBTitle: the apobec2 crystal structure and functional implications2 for aid
46c6bwyA_



not modelled 85.9 22
PDB header:hydrolase
Chain: A: PDB Molecule:protection of telomeres protein 1, dna dc->du-editing
PDBTitle: dna substrate selection by apobec3g
47c2m65A_



not modelled 82.9 26
PDB header:hydrolase
Chain: A: PDB Molecule:probable dna dc->du-editing enzyme apobec-3a;
PDBTitle: nmr structure of human restriction factor apobec3a
48d2hi7b1



not modelled 28.5 43
Fold:Bromodomain-like
Superfamily:DsbB-like
Family:DsbB-like
49c3e9jC_



not modelled 28.4 43
PDB header:oxidoreductase
Chain: C: PDB Molecule:thiol/disulfide oxidoreductase dsbb;
PDBTitle: structure of the charge-transfer intermediate of the2 transmembrane redox catalyst dsbb
50c5mp0D_



not modelled 26.9 31
PDB header:hydrolase
Chain: D: PDB Molecule:m7gpppn-mrna hydrolase;
PDBTitle: human m7gpppn-mrna hydrolase (dcp2, nudt20) catalytic domain
51c2k74A_



not modelled 25.9 29
PDB header:membrane protein, oxidoreductase
Chain: A: PDB Molecule:disulfide bond formation protein b;
PDBTitle: solution nmr structure of dsbb-ubiquinone complex
52d2a6ta2



not modelled 23.7 25
Fold:Nudix
Superfamily:Nudix
Family:mRNA decapping enzyme-like
53c4zbpC_



not modelled 22.9 13
PDB header:hydrolase
Chain: C: PDB Molecule:nudix hydrolase 7;
PDBTitle: crystal structure of the ampcpr-bound atnudt7
54c2m1cA_



not modelled 20.4 13
PDB header:hydrolase
Chain: A: PDB Molecule:dhh subfamily 1 protein;
PDBTitle: haddock structure of gtyybt pas homodimer
55d1xdpa4



not modelled 19.9 16
Fold:Phospholipase D/nuclease
Superfamily:Phospholipase D/nuclease
Family:Polyphosphate kinase C-terminal domain
56d2o8ra4



not modelled 19.5 20
Fold:Phospholipase D/nuclease
Superfamily:Phospholipase D/nuclease
Family:Polyphosphate kinase C-terminal domain
57c3l48B_



not modelled 19.1 36
PDB header:transport protein
Chain: B: PDB Molecule:outer membrane usher protein papc;
PDBTitle: crystal structure of the c-terminal domain of the papc usher
58c3u3gA_



not modelled 18.2 23
PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease h;
PDBTitle: structure of lc11-rnase h1 isolated from compost by metagenomic2 approach: insight into the structural bases for unusual enzymatic3 properties of sto-rnase h1
59d1xfna1



not modelled 14.6 33
Fold:Profilin-like
Superfamily:PYP-like sensor domain (PAS domain)
Family:PYP-like
60c2xzn5_



not modelled 13.8 45
PDB header:ribosome
Chain: 5: PDB Molecule:ribosomal protein s26e containing protein;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2
61c6bwsA_



not modelled 12.3 21
PDB header:unknown function
Chain: A: PDB Molecule:glycolate utilization protein;
PDBTitle: crystal structure of efga from methylobacterium extorquens
62c3gxgA_



not modelled 12.0 15
PDB header:hydrolase
Chain: A: PDB Molecule:putative phosphatase (duf442);
PDBTitle: crystal structure of putative phosphatase (duf442) (yp_001181608.1)2 from shewanella putrefaciens cn-32 at 1.60 a resolution
63c3j38a_



not modelled 12.0 33
PDB header:ribosome
Chain: A: PDB Molecule:40s ribosomal protein sa;
PDBTitle: structure of the d. melanogaster 40s ribosomal proteins
64c3ef5A_



not modelled 11.6 21
PDB header:hydrolase
Chain: A: PDB Molecule:probable pyrophosphohydrolase;
PDBTitle: structure of the rna pyrophosphohydrolase bdrpph in complex with dgtp
65d1zcza2



not modelled 11.5 20
Fold:Cytidine deaminase-like
Superfamily:Cytidine deaminase-like
Family:AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC
66d1jfua_



not modelled 11.4 26
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione peroxidase-like
67c6hiuA_



not modelled 10.8 27
PDB header:oxidoreductase
Chain: A: PDB Molecule:cytochrome p460;
PDBTitle: cytochrome p460 from methylococcus capsulatus (bath)
68c2o8rA_



not modelled 10.7 20
PDB header:transferase
Chain: A: PDB Molecule:polyphosphate kinase;
PDBTitle: crystal structure of polyphosphate kinase from porphyromonas2 gingivalis
69c4nkpD_



not modelled 10.6 21
PDB header:chaperone
Chain: D: PDB Molecule:putative extracellular heme-binding protein;
PDBTitle: crystal structure of a putative extracellular heme-binding protein2 (despig_02683) from desulfovibrio piger atcc 29098 at 1.24 a3 resolution
70c5xxua_



not modelled 10.4 40
PDB header:ribosome
Chain: A: PDB Molecule:ribosomal protein us2;
PDBTitle: small subunit of toxoplasma gondii ribosome
71d1ttza_



not modelled 10.4 33
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Thioltransferase
72c2xetB_



not modelled 9.9 17
PDB header:transport protein
Chain: B: PDB Molecule:f1 capsule-anchoring protein;
PDBTitle: conserved hydrophobic clusters on the surface of the caf1a usher2 c-terminal domain are important for f1 antigen assembly
73c3u5ga_



not modelled 9.7 35
PDB header:ribosome
Chain: A: PDB Molecule:40s ribosomal protein s0-a;
PDBTitle: the structure of the eukaryotic ribosome at 3.0 a resolution. this2 entry contains proteins of the 40s subunit, ribosome b
74c4a1oB_



not modelled 9.5 22
PDB header:transferase-hydrolase
Chain: B: PDB Molecule:bifunctional purine biosynthesis protein purh;
PDBTitle: crystal structure of mycobacterium tuberculosis purh complexed with2 aicar and a novel nucleotide cfair, at 2.48 a resolution.
75d1j9ba_



not modelled 9.1 17
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:ArsC-like
76c5xyia_



not modelled 9.1 35
PDB header:ribosome
Chain: A: PDB Molecule:40s ribosomal protein sa;
PDBTitle: small subunit of trichomonas vaginalis ribosome
77c1zy7A_



not modelled 8.9 33
PDB header:hydrolase
Chain: A: PDB Molecule:rna-specific adenosine deaminase b1, isoform
PDBTitle: crystal structure of the catalytic domain of an adenosine2 deaminase that acts on rna (hadar2) bound to inositol3 hexakisphosphate (ihp)
78d1psqa_



not modelled 8.9 19
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione peroxidase-like
79d2a2la1



not modelled 8.9 23
Fold:Profilin-like
Superfamily:GlcG-like
Family:GlcG-like
80d1vcda1



not modelled 8.5 38
Fold:Nudix
Superfamily:Nudix
Family:MutT-like
81c6gyyB_



not modelled 8.4 27
PDB header:transferase
Chain: B: PDB Molecule:diadenylate cyclase;
PDBTitle: crystal structure of daca from staphylococcus aureus, n166c/t172c2 double mutant
82c3zeyV_



not modelled 8.3 35
PDB header:ribosome
Chain: V: PDB Molecule:ribosomal protein s26, putative;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
83c4pdeA_



not modelled 8.3 14
PDB header:hydrolase
Chain: A: PDB Molecule:protein fdhd;
PDBTitle: crystal structure of fdhd in complex with gdp
84c2k1aA_



not modelled 8.1 57
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: bicelle-embedded integrin alpha(iib) transmembrane segment
85c2kncA_



not modelled 8.1 50
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
86d1nuia2



not modelled 7.9 27
Fold:Rubredoxin-like
Superfamily:Zinc beta-ribbon
Family:DNA primase zinc finger
87c4gpuA_



not modelled 7.7 13
PDB header:hydrolase
Chain: A: PDB Molecule:klla0e02245p;
PDBTitle: crystal structure of k. lactis dxo1 (ydr370c) in complex with2 manganese
88c5y4uA_



not modelled 7.7 21
PDB header:oxidoreductase
Chain: A: PDB Molecule:monothiol glutaredoxin-3;
PDBTitle: crystal structure of grx domain of grx3 from saccharomyces cerevisiae
89c3watA_



not modelled 7.3 12
PDB header:transferase
Chain: A: PDB Molecule:4-o-beta-d-mannosyl-d-glucose phosphorylase;
PDBTitle: crystal structure of 4-o-beta-d-mannosyl-d-glucose phosphorylase mgp2 complexed with man+glc
90c4ehiB_



not modelled 7.3 23
PDB header:hydrolase,transferase
Chain: B: PDB Molecule:bifunctional purine biosynthesis protein purh;
PDBTitle: an x-ray crystal structure of a putative bifunctional2 phosphoribosylaminoimidazolecarboxamide formyltransferase/imp3 cyclohydrolase
91c2muqA_



not modelled 7.1 38
PDB header:ubiquitin binding protein
Chain: A: PDB Molecule:fanconi anemia-associated protein of 20 kda;
PDBTitle: solution structure of the human faap20 ubz
92d1q98a_



not modelled 7.0 9
Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione peroxidase-like
93c2murA_



not modelled 6.8 38
PDB header:protein binding
Chain: A: PDB Molecule:fanconi anemia-associated protein of 20 kda;
PDBTitle: solution structure of the human faap20 ubz-ubiquitin complex
94c3a03A_



not modelled 6.7 22
PDB header:gene regulation
Chain: A: PDB Molecule:t-cell leukemia homeobox protein 2;
PDBTitle: crystal structure of hox11l1 homeodomain
95c2zvkU_



not modelled 6.5 38
PDB header:transferase
Chain: U: PDB Molecule:dna polymerase eta;
PDBTitle: crystal structure of pcna in complex with dna polymerase eta fragment
96c6dknA_



not modelled 6.4 27
PDB header:hydrolase
Chain: A: PDB Molecule:decapping nuclease dxo homolog, chloroplastic;
PDBTitle: crystal structure of arabidopsis thaliana decapping nuclease dxo1
97c5zvqA_



not modelled 6.4 18
PDB header:recombination
Chain: A: PDB Molecule:recombination protein recr;
PDBTitle: crystal structure of recombination mediator protein recr
98c2yzhD_



not modelled 6.4 8
PDB header:oxidoreductase
Chain: D: PDB Molecule:probable thiol peroxidase;
PDBTitle: crystal structure of peroxiredoxin-like protein from aquifex aeolicus
99c3ipzA_



not modelled 6.2 15
PDB header:electron transport, oxidoreductase
Chain: A: PDB Molecule:monothiol glutaredoxin-s14, chloroplastic;
PDBTitle: crystal structure of arabidopsis monothiol glutaredoxin atgrxcp

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