Phyre Home Retrieve Phyre Job Id
Emailmdejesus@rockefeller.edu
DescriptionRVBD3780_(-)_4227167_4227703
DateFri Aug 9 18:20:48 BST 2019
Unique Job IDd57d29f106d24bc6
SequenceVRKRMVIGLS ... Download FASTA
Job Typenormal
Job Expiry

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:31.558 Y:29.201 Z:55.915
Model (left) based on template c5ietA_
Top template information
PDB header:gene regulation
Chain: A: PDB Molecule:bacterial proteasome activator;
PDBTitle: crystal structure of mycobacterium tuberculosis atp-independent2 proteasome activator
Confidence and coverage
Confidence:100.0% Coverage: 62%
111 residues ( 62% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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Sequence analysis 

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Secondary structure and disorder prediction [Show] 

Domain analysis [Show] 

Detailed template information [Hide] 

 

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Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c5ietA_



100.0 97
PDB header:gene regulation
Chain: A: PDB Molecule:bacterial proteasome activator;
PDBTitle: crystal structure of mycobacterium tuberculosis atp-independent2 proteasome activator
2c2lseA_



69.8 32
PDB header:de novo protein
Chain: A: PDB Molecule:four helix bundle protein;
PDBTitle: solution nmr structure of de novo designed four helix bundle protein,2 northeast structural genomics consortium (nesg) target or188
3c2veeC_



36.9 16
PDB header:transport protein
Chain: C: PDB Molecule:protoglobin;
PDBTitle: structure of protoglobin from methanosarcina acetivorans2 c2a
4d2bmob1



31.8 31
Fold:Cystatin-like
Superfamily:NTF2-like
Family:Ring hydroxylating beta subunit
5c2l6fA_



28.6 27
PDB header:transferase,cell adhesion
Chain: A: PDB Molecule:focal adhesion kinase 1, linker1, paxillin, linker2,
PDBTitle: nmr solution structure of fat domain of fak complexed with ld2 and ld42 motifs of paxillin
6c5oheA_



24.3 16
PDB header:transferase
Chain: A: PDB Molecule:globin-coupled histidine kinase;
PDBTitle: globin sensor domain of afgchk (feiii form) in complex with cyanide
7d2gjxa2



21.1 38
Fold:Zincin-like
Superfamily:beta-N-acetylhexosaminidase-like domain
Family:beta-N-acetylhexosaminidase domain
8d1qbaa4



17.8 44
Fold:Zincin-like
Superfamily:beta-N-acetylhexosaminidase-like domain
Family:beta-N-acetylhexosaminidase domain
9d2csba1



17.7 50
Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:Topoisomerase V repeat domain
10d2cbia3



15.3 45
Fold:Zincin-like
Superfamily:beta-N-acetylhexosaminidase-like domain
Family:Hyaluronidase N-terminal domain-like
11c4tzoC_



14.6 14
PDB header:peptide binding protein
Chain: C: PDB Molecule:protein htp-1;
PDBTitle: structure of c. elegans htp-1 bound to him-3 closure motif
12d1m98a1



12.8 33
Fold:Orange carotenoid protein, N-terminal domain
Superfamily:Orange carotenoid protein, N-terminal domain
Family:Orange carotenoid protein, N-terminal domain
13d1nowa2



12.6 38
Fold:Zincin-like
Superfamily:beta-N-acetylhexosaminidase-like domain
Family:beta-N-acetylhexosaminidase domain
14d2aq0a1



12.2 16
Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:Hef domain-like
15c4xy3A_



12.1 20
PDB header:protein transport
Chain: A: PDB Molecule:esx-1 secretion-associated protein espb;
PDBTitle: structure of esx-1 secreted protein espb
16c2gbxF_



10.5 23
PDB header:oxidoreductase
Chain: F: PDB Molecule:biphenyl 2,3-dioxygenase beta subunit;
PDBTitle: crystal structure of biphenyl 2,3-dioxygenase from sphingomonas2 yanoikuyae b1 bound to biphenyl
17d1jaka2



10.1 88
Fold:Zincin-like
Superfamily:beta-N-acetylhexosaminidase-like domain
Family:beta-N-acetylhexosaminidase domain
18d1j9ia_



9.3 17
Fold:Putative DNA-binding domain
Superfamily:Putative DNA-binding domain
Family:Terminase gpNU1 subunit domain
19c1o8tA_



9.3 26
PDB header:lipid transport
Chain: A: PDB Molecule:apolipoprotein c-ii;
PDBTitle: global structure and dynamics of human apolipoprotein cii2 in complex with micelles: evidence for increased mobility3 of the helix involvved in the activation of lipoprotein4 lipase.
20d2choa3



9.2 33
Fold:Zincin-like
Superfamily:beta-N-acetylhexosaminidase-like domain
Family:Hyaluronidase N-terminal domain-like
21c4wj2A_



not modelled 9.1 16
PDB header:unknown function
Chain: A: PDB Molecule:antigen mtb48;
PDBTitle: mycobacterial protein
22d1ha9a_



not modelled 9.1 39
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Plant inhibitors of proteinases and amylases
Family:Plant inhibitors of proteinases and amylases
23c2xcqA_



not modelled 8.6 34
PDB header:isomerase
Chain: A: PDB Molecule:dna gyrase subunit b, dna gyrase subunit a;
PDBTitle: the 2.98a crystal structure of the catalytic core (b'a'2 region) of staphylococcus aureus dna gyrase
24d2paga1



not modelled 8.6 26
Fold:SMI1/KNR4-like
Superfamily:SMI1/KNR4-like
Family:SMI1/KNR4-like
25d2eifa1



not modelled 8.6 57
Fold:SH3-like barrel
Superfamily:Translation proteins SH3-like domain
Family:eIF5a N-terminal domain-like
26c2wssT_



not modelled 8.4 18
PDB header:hydrolase
Chain: T: PDB Molecule:atp synthase subunit b, mitochondrial;
PDBTitle: the structure of the membrane extrinsic region of bovine atp synthase
27c3kogA_



not modelled 8.4 58
PDB header:membrane protein
Chain: A: PDB Molecule:putative pore-forming toxin;
PDBTitle: crystal structure of putative pore-forming toxin (yp_001301288.1) from2 bacteroides vulgatus atcc 8482 at 1.85 a resolution
28c5wowA_



not modelled 8.1 39
PDB header:de novo protein
Chain: A: PDB Molecule:two inhibitor peptide topologies 2;
PDBTitle: solution nmr structure of cyclotide mcoti-i
29c6mcjA_



not modelled 7.9 27
PDB header:protein binding
Chain: A: PDB Molecule:orange carotenoid-binding protein;
PDBTitle: structure of helical carotenoid protein 2 from fremyella diplosiphon
30d1bkba1



not modelled 7.9 57
Fold:SH3-like barrel
Superfamily:Translation proteins SH3-like domain
Family:eIF5a N-terminal domain-like
31d1iz6a1



not modelled 7.8 43
Fold:SH3-like barrel
Superfamily:Translation proteins SH3-like domain
Family:eIF5a N-terminal domain-like
32c2m86A_



not modelled 7.7 39
PDB header:protein binding/signaling protein
Chain: A: PDB Molecule:mco-pmi;
PDBTitle: solution structure of hdm2 with engineered cyclotide
33c1abzA_



not modelled 7.3 47
PDB header:de novo design
Chain: A: PDB Molecule:alpha-t-alpha;
PDBTitle: alpha-t-alpha, a de novo designed peptide, nmr, 232 structures
34d1t8sa_



not modelled 7.2 14
Fold:Phosphorylase/hydrolase-like
Superfamily:Purine and uridine phosphorylases
Family:Purine and uridine phosphorylases
35d1t3ta1



not modelled 7.2 34
Fold:RuvA C-terminal domain-like
Superfamily:FGAM synthase PurL, linker domain
Family:FGAM synthase PurL, linker domain
36c3odmE_



not modelled 7.2 29
PDB header:lyase
Chain: E: PDB Molecule:phosphoenolpyruvate carboxylase;
PDBTitle: archaeal-type phosphoenolpyruvate carboxylase
37c1bdgA_



not modelled 6.9 20
PDB header:hexokinase
Chain: A: PDB Molecule:hexokinase;
PDBTitle: hexokinase from schistosoma mansoni complexed with glucose
38d2acva1



not modelled 6.8 18
Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:UDPGT-like
39d1v4sa1



not modelled 6.6 26
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Hexokinase
40c6db1A_



not modelled 6.6 26
PDB header:transferase
Chain: A: PDB Molecule:putative methyl-accepting chemotaxis protein;
PDBTitle: 2.0 angstrom resolution crystal structure of n-terminal ligand-binding2 domain of putative methyl-accepting chemotaxis protein from3 salmonella enterica
41d2fug71



not modelled 6.5 35
Fold:N domain of copper amine oxidase-like
Superfamily:Frataxin/Nqo15-like
Family:Nqo15-like
42c3a0mB_



not modelled 6.5 64
PDB header:structural protein
Chain: B: PDB Molecule:collagen-like peptide;
PDBTitle: structure of (ppg)4-ovg-(ppg)4, monoclinic, twinned crystal
43c3a0mD_



not modelled 6.5 64
PDB header:structural protein
Chain: D: PDB Molecule:collagen-like peptide;
PDBTitle: structure of (ppg)4-ovg-(ppg)4, monoclinic, twinned crystal
44c1t3tA_



not modelled 6.4 34
PDB header:ligase
Chain: A: PDB Molecule:phosphoribosylformylglycinamidine synthase;
PDBTitle: structure of formylglycinamide synthetase
45c4z2cA_



not modelled 6.2 27
PDB header:isomerase
Chain: A: PDB Molecule:dna gyrase subunit a;
PDBTitle: quinolone(moxifloxacin)-dna cleavage complex of gyrase from s.2 pneumoniae
46c1m98A_



not modelled 6.2 33
PDB header:unknown function
Chain: A: PDB Molecule:orange carotenoid protein;
PDBTitle: crystal structure of orange carotenoid protein
47c2h1yA_



not modelled 6.2 23
PDB header:transferase
Chain: A: PDB Molecule:malonyl coenzyme a-acyl carrier protein transacylase;
PDBTitle: crystal structure of malonyl-coa:acyl carrier protein transacylase2 (mcat) from helicobacter pylori
48c6b9rD_



not modelled 6.1 7
PDB header:oxidoreductase
Chain: D: PDB Molecule:hydroxyethylphosphonate dioxygenase;
PDBTitle: streptomyces albus hepd with substrate 2-hydroxyethylphosphonate (2-2 hep) and fe(ii) bound
49c3a0mC_



not modelled 6.0 64
PDB header:structural protein
Chain: C: PDB Molecule:collagen-like peptide;
PDBTitle: structure of (ppg)4-ovg-(ppg)4, monoclinic, twinned crystal
50c3a0mE_



not modelled 5.9 64
PDB header:structural protein
Chain: E: PDB Molecule:collagen-like peptide;
PDBTitle: structure of (ppg)4-ovg-(ppg)4, monoclinic, twinned crystal
51d1bdga1



not modelled 5.9 20
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Hexokinase
52c6n0wA_



not modelled 5.9 18
PDB header:ligase
Chain: A: PDB Molecule:tyrosine--trna ligase;
PDBTitle: crystal structure of a tyrosine--trna ligase from elizabethkingia2 anophelis
53d2je6i3



not modelled 5.7 47
Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
54c5zqtA_



not modelled 5.7 29
PDB header:transferase
Chain: A: PDB Molecule:hexokinase-6;
PDBTitle: crystal structure of oryza sativa hexokinase 6
55c1dlyA_



not modelled 5.7 13
PDB header:oxygen storage/transport
Chain: A: PDB Molecule:hemoglobin;
PDBTitle: x-ray crystal structure of hemoglobin from the green2 unicellular alga chlamydomonas eugametos
56d1dlya_



not modelled 5.7 13
Fold:Globin-like
Superfamily:Globin-like
Family:Truncated hemoglobin
57d2cs7a1



not modelled 5.6 50
Fold:IL8-like
Superfamily:PhtA domain-like
Family:PhtA domain-like
58c3wqyB_



not modelled 5.6 29
PDB header:ligase/rna
Chain: B: PDB Molecule:alanine--trna ligase;
PDBTitle: crystal structure of archaeoglobus fulgidus alanyl-trna synthetase in2 complex with wild-type trna(ala) having g3.u70
59d1xbta2



not modelled 5.6 54
Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Type II thymidine kinase zinc finger
60d1k1ga_



not modelled 5.6 17
Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
61c4lgiD_



not modelled 5.4 50
PDB header:hydrolase
Chain: D: PDB Molecule:uncharacterized protein;
PDBTitle: n-terminal truncated nlec structure
62c4bxoB_



not modelled 5.4 19
PDB header:hydrolase/dna
Chain: B: PDB Molecule:fanconi anemia-associated protein of 24 kda;
PDBTitle: architecture and dna recognition elements of the fanconi anemia fancm-2 faap24 complex
63c3a0mA_



not modelled 5.4 64
PDB header:structural protein
Chain: A: PDB Molecule:collagen-like peptide;
PDBTitle: structure of (ppg)4-ovg-(ppg)4, monoclinic, twinned crystal
64c3k7dA_



not modelled 5.3 11
PDB header:transferase
Chain: A: PDB Molecule:glutamate-ammonia-ligase adenylyltransferase;
PDBTitle: c-terminal (adenylylation) domain of e.coli glutamine synthetase2 adenylyltransferase
65c6fpeG_



not modelled 5.2 28
PDB header:rna binding protein
Chain: G: PDB Molecule:trna n6-adenosine threonylcarbamoyltransferase;
PDBTitle: bacterial protein complex
66d2ebfx3



not modelled 5.1 54
Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:PMT C-terminal domain like
67d2cfua2



not modelled 5.0 24
Fold:Metallo-hydrolase/oxidoreductase
Superfamily:Metallo-hydrolase/oxidoreductase
Family:Alkylsulfatase-like
68d1bg3a1



not modelled 5.0 24
Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Hexokinase

Binding site prediction 

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