Rv3798 (-)

background  +5   0  -5 -10 -15 sgRNA L2FC (+ATc/–ATc) TnSeq Gene Essentiality Predictions (1, 2) Essential Growth Defect Non-Essential Growth Advantage Unknown Operon Legend (3) Operon (1) PMID: 28096490 (2) PMID: 31388080 (3) PMID: 26536359 Rv3796 fadE35 Rv3798 accD4 pks13
Species: M. tuberculosis
Strain: H37Rv
PATRIC Annotation: transposase
Synonyms:
M. smegmatis homologs MSMEG5398, MSMEG2830, MSMEG1239, MSMEG0430
M. abscessus homologs
Gene Start: 4253171
Gene End: 4254505
Vulnerability Index (VI):
VI Lower Bound:
VI Upper Bound:
[AlphaFold] [Orthologs] [Phyre2] [UniProt] [MycoBrowser] [U19] [TnSeq DB]

Essentiality:

Call Condition Type Source Notes
Non Essential in vitro TnSeq [DeJesus et al. (2017)]
Unknown in vitro CRISPRi [Bosch & DeJesus et al. (2021)]


DNA and Protein Sequence help

DNA Sequence

CCTGGGAACGGGCAACCCGCGGCACCGACCGCAAGGCACTCGTCGCCCGCCTGTACGCGCGCCGGTATCTCGCCGACCAAGGCCCGCTGCGCGGTATCGACGCAGATTGCGATGAGGCGCTGCAGCGTTTCGACGAACTCGTGGCGGGCGCGTTCACTGCCGAGCAGACGTAAAAGCCCCCAATTCGTGGCTCTTCTGACACTTCCGTGGGTGAGTTTGTGTCCTGAGTAGGCGCACGTCGTTGTGGCTTAAGGTTTCTGGCTTGTCAAGGATCAGAAACACAAGGAGCCGACAACGACGTGCGCAATGTGAGGCTATTTCGTGCGCTGCTGGGTGTCGACAAGCGCACCGTGATTGAGGACATCGAATTCGAGGAGGATGACGCCGGAGACGGTGCGCGGGTGATCGCCCGGGTGCGGCCACGAAGTGCAGTGTTGCGCCGCTGTGGTCGCTGCGGTCGCAAGGCGTCCTGGTATGACCGCGGTGCGGGCCTGCGCCAATGGCGCAGTCTGGATTGGGGCACCGTCGAGGTGTTCTTGGAGGCCGAGGCGCCGCGGGTGAACTGCCCCACCCATGGGCCGACGGTGGTGGCGGTGCCGTGGGCGCGTCATCATGCCGGGCACACGTATGCTTTCGATGACACGGTGGCCTGGCTGGCGGTGGCGTGTTCGAAGACCGCGGTGTGCGAGTTGATGCGGATCGCCTGGCGCACCGTCGGGGCGATCGTGGCCCGGGTCTGGGCCGACACCGAAAAGCGCATTGACCGGTTCGCGAACTTGCGCCGCATCGGTATCGATGAGATCTCCTACAAGCGCCACCACCGGTACCTGACGGTGGTCGTCGATCACGACAGCGGCCGGTTGGTGTGGGCCGCCCCGGGCCACGACAAGGCCACCCTGGGCTTGTTCTTCGATGCCCTGGGCGCTGAGCGGGCCGCCCAGATTACTCACGTTTCGGCCGATGCCGCGGACTGGATCGCTGACGTGGTCACCGAGCGCTGCCCGGATGCGATTCAATGCGCCGATCCGTTTCATGTGGTGGCCTGGGCCACCGAGGCGCTCGACGTCGAGCGGCGCCGAGCCTGGAACGACGCACGGGCGATCGCGCGCACCGAACCCAAGTGGGGCCGGGGCCGGCCCGGTAAGAACGCCGCACCACGTCCGGGCCGCGAGCGGGCACGGCGGCTCAAGGGCGCCCGCTACGCGCTGTGGAAGAACCCCGAGGACCTCACCGAACGCCAAAGCGCCAAACTGGCCTGGATCGCCAAGACCGATCCCCGTCTGTATCGCGCCTACCTGCTCAAAGAGAGCCTGCGGCATGTGTTTTCGGTCAAGGGCGAGGAAGGTAAACAGGCCCTGGACCGGTGGATCTCCTGGGCCCAGCGCTGTCGCATCCCGGTATTCGTCGAGCTTGCCGCCCGCATCAAACGCCACCGGGTGGCCATCGACGCCGCCCTCGACCACGGCCTATCCCAAGGCCTGATCGAATCCACCAACACCAAGATCCGCCTACTGACCCGGATCGCGTTCGGATTCCGCTCACCACAAGCCCTCATCGCCCTAGCCATGCTCACCCTCGCCGGCCACCGCCCCACCCTGCCAGGCCGACACAACCACCCACAGATCAGTCAGTAG

Protein Sequence

VRNVRLFRALLGVDKRTVIEDIEFEEDDAGDGARVIARVRPRSAVLRRCGRCGRKASWYDRGAGLRQWRSLDWGTVEVFLEAEAPRVNCPTHGPTVVAVPWARHHAGHTYAFDDTVAWLAVACSKTAVCELMRIAWRTVGAIVARVWADTEKRIDRFANLRRIGIDEISYKRHHRYLTVVVDHDSGRLVWAAPGHDKATLGLFFDALGAERAAQITHVSADAADWIADVVTERCPDAIQCADPFHVVAWATEALDVERRRAWNDARAIARTEPKWGRGRPGKNAAPRPGRERARRLKGARYALWKNPEDLTERQSAKLAWIAKTDPRLYRAYLLKESLRHVFSVKGEEGKQALDRWISWAQRCRIPVFVELAARIKRHRVAIDAALDHGLSQGLIESTNTKIRLLTRIAFGFRSPQALIALAMLTLAGHRPTLPGRHNHPQISQ_ 
Gene not present in the RLC0012 CRISPRi library.

Specific References

General References