MSMEG1310
ms1310
-
M. smegmatis · MC2-155
[AlphaFold] [Orthologs] [Phyre2] [UniProt] [MycoBrowser] [TnSeq DB] [SeqHub]
MC2-155 Coordinates: 1402450 – 1403853
Vulnerability Index (VI):
M. tuberculosis homologs
M. abscessus homologs
background  +5   0  -5 -10 -15 sgRNA L2FC (+ATc/–ATc) TnSeq Gene Essentiality Predictions (1, 2) Essential Growth Defect Non-Essential Growth Advantage Unknown Operon Legend (3) Operon (1) PMID: 28096490 (2) PMID: 31388080 (3) PMID: 26536359 MSMEG1306 MSMEG1307 MSMEG1308 MSMEG1309 MSMEG1310 MSMEG1311 MSMEG1312
Click the tabs above to view different types of data for this gene. The Vulnerability tab shows CRISPRi fitness data.
DNA and Protein Sequence help

DNA Sequence 

>ms1310_MSMEG1310_dna
GGCGGTGTGCGAATGGTTCGCCCGATACCAGACGCTGACCCGGGCCGGCGTGCGCGTACGACGGCGAGGGTTCTCGTGGTGGCTGGGTGCCGTGTGGCTGCTGTCCCAATGGTGGCGGTAGCAGTGCTGTACGTCCGTCGGGTCAACGTGTACTACGAACGGCACATGACCGCGCCTTAGCCTCGATCCACCGATGAATCGCCTGGTCGGAGGGTGTTGATATAAGGAAAGTGCCCTTTGAGCTGGGATGATTGGAGTTACCACACTTCGATCAGCCCACGGTCAGAAAGGCACTTCCGGTGCAAGTGTCCCATAGGTTCGCCGTGTCGTCGGCGGTCTTCGATGATGCCCATCTCGTGTCGTGCGCCGGGCTGGTGCCGGTGATGACGTTGGCGGCCCAGACCGGACTACCGAAGTTGTTGGCCGACAAGATTTCCATTCCGGCACCGAAGATCAAATCCGGCTCGGCGAATCCGTCCCCGAAGCTGACCACGGTGATCGCCGGCATGTGTGTCGGCGCGGACAGCATTGATGACCTCGACCTCGTGCGTGGCGGCGGGATGAAGACACTCTTTGGCGGTGTGTATGCACCGTCAACTGTTGGTACTTTGTTGCGGGAGTTCACCTTCGGACACGCCCGGCAGTTGGAGTCGGTCCTGCGTCATCATCTGGCCGCACTCTGTGCGCGGGTGGACCTGCTGCCCGGATCCGACACGGGGGCGTTCATCGACATCGACTCACTGCTGCGCCCGGTCTATGGCCACGCCAAACAGGGTGCCTCCTACGGGCATACCAAGATCGCTGGTAAGCAGGTTCTGCGTAAAGGGCTCTCCCCGTTGGCGACGACGATCAGCACCCCCGGAGCGGCGCCGGTGATCGCCGGGATGCGGCTGCGCGCCGGTAAGACCAGTTCCGGGAAGGGTGCGGGCCGCATGGTCGCCCAAGCCATCGCCACCGCCCGCGCCGCCGGCGTGCGCGGGCAACTGCTGGTGCGTGGCGATTCGTCCTACGGCACCCGGTCGGTGGTGGGCGCCTGCCGAGCCCACAATGCGCACTTCTCGGTGGTGATGACCCGCAATACCGCGGTTGATCGGGCCATCAGTTCGATCGACGAGCAGGCCTGGGAGCCGGTCAACTATCCCGGTGCAGTGCGTGATCCCGACACCGGTGACTGGATTTCTGATGCCGAGGTCGCCGAGGTCAGCTACACCGCCTTCGCCTCTACCAAAGATCGGTTCACCGCGCGGTTGGTGGTGCGGCGAGTCAAAGACGCGAGATTTCGGGACGCGCTGTTCCCGGTGTGGCGGTATCACCCGTTCTTCACCAACACAGACTTGCCGACCGCCGAGGCTGACATCACCCACCGCCAGCACGCGATCATCGAAACCGTCTTCGCCGATCTGATCGACGGACCCCTGGCCCACATGCCCTCAGGACAGTTCGGTGCCAACAGTGCGTGGGTGTTGTGCGCGGCGATCGCGCACAACCTGCTGCGCGCCGCCGGCGTGCTCGCAGGAGGTGCCCACGTGGTTGCCCGCGGCGCGACGCTGCGCCGCAAGATCGTCAACATTCCCGCCCGTCTGGCCCGACCCCAGCGTCGACCGATCCTGCACCTCCCCGAGCACTGGCCCTGGACAGAGCACTGGCTCACGTTGTGGCGCAACACCATCGGATACAGCCCACCGCTACCGGCAACGACCTGA

Protein Sequence 

>Ms1310_MSMEG1310_protein
VQVSHRFAVSSAVFDDAHLVSCAGLVPVMTLAAQTGLPKLLADKISIPAPKIKSGSANPSPKLTTVIAGMCVGADSIDDLDLVRGGGMKTLFGGVYAPSTVGTLLREFTFGHARQLESVLRHHLAALCARVDLLPGSDTGAFIDIDSLLRPVYGHAKQGASYGHTKIAGKQVLRKGLSPLATTISTPGAAPVIAGMRLRAGKTSSGKGAGRMVAQAIATARAAGVRGQLLVRGDSSYGTRSVVGACRAHNAHFSVVMTRNTAVDRAISSIDEQAWEPVNYPGAVRDPDTGDWISDAEVAEVSYTAFASTKDRFTARLVVRRVKDARFRDALFPVWRYHPFFTNTDLPTAEADITHRQHAIIETVFADLIDGPLAHMPSGQFGANSAWVLCAAIAHNLLRAAGVLAGGAHVVARGATLRRKIVNIPARLARPQRRPILHLPEHWPWTEHWLTLWRNTIGYSPPLPATT

Essentiality:

Call Condition Type Source Notes
Unknown in vitro CRISPRi [Bosch & DeJesus et al. (2021)]
Non Essential in vitro TnSeq [Dragset et al. (2019)]

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