MSMEG1560
ms1560
-
M. smegmatis · MC2-155
[AlphaFold] [Orthologs] [Phyre2] [UniProt] [MycoBrowser] [TnSeq DB] [SeqHub]
MC2-155 Coordinates: 1649573 – 1649881
Vulnerability Index (VI):
M. tuberculosis homologs Rv3440c
M. abscessus homologs MAB3747c
background  +5   0  -5 -10 -15 sgRNA L2FC (+ATc/–ATc) TnSeq Gene Essentiality Predictions (1, 2) Essential Growth Defect Non-Essential Growth Advantage Unknown Operon Legend (3) Operon (1) PMID: 28096490 (2) PMID: 31388080 (3) PMID: 26536359 rplM rpsI MSMEG1558 glmM MSMEG1560 MSMEG1561 MSMEG1563
Click the tabs above to view different types of data for this gene. The Vulnerability tab shows CRISPRi fitness data.
DNA and Protein Sequence help

DNA Sequence 

>ms1560_MSMEG1560_dna
GCCGACGCCATGCATTCGCTGCCGCAGGTGCTGATCAACGTCGCGGTCGCCGACAAGACCACGGTTGCGCAGGCACCGTCGGTGCGGTCGGCCGTGGCCGCCGCCGAGGCCGAACTGGGTGACACCGGACGGATCCTGTTGCGCCCGTCCGGAACCGAGCAGGTGGTGCGGGTCATGGTCGAGGCGGCCGACGAGGACACCGCACGCCAGGTCGCGGCGCGGGTCGCCGAATCCGTGAGTCTGCAGGGATAGTCGCCGAACAGGGAACCGGACCGGCACCCGGTGCGTCTAAACGGTGCATGGGAGAGTTCGATCGGGCCAGCGTGGACGCCGACGCGCTGCGTGCGGCAGCACACGGCTACGACACCGTCGCCGAAACCATCGATACCGTCATCCGGACGACGCTGGGCCGACCGGCCTTCGACGGCGCGTCCGCCGGGCGCCGCCATGTCGCGCACGGCAACGCCGTCCGCGGCGCGCTCGACGACCTGACCGGCGCGATGCGGCAGTGGGCGACCGCCGCCGACGAGATCGCCCACCTCTTACGAACCTCGGCCGGCCGTTACGCCGCCGCCGACGATCACGCGGCGGCACGGGTGGGTGGCTAG

Protein Sequence 

>Ms1560_MSMEG1560_protein
MGEFDRASVDADALRAAAHGYDTVAETIDTVIRTTLGRPAFDGASAGRRHVAHGNAVRGALDDLTGAMRQWATAADEIAHLLRTSAGRYAAADDHAAARVGG

Essentiality:

Call Condition Type Source Notes
Unknown in vitro CRISPRi [Bosch & DeJesus et al. (2021)]
Non Essential in vitro TnSeq [Dragset et al. (2019)]

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