xseB
ms5227
-
M. smegmatis · MC2-155
[AlphaFold] [Orthologs] [Phyre2] [UniProt] [MycoBrowser] [TnSeq DB] [SeqHub]
MC2-155 Coordinates: 5321630 – 5321842
Vulnerability Index (VI):
M. tuberculosis homologs xseB
M. abscessus homologs MAB1254c
background  +5   0  -5 -10 -15 sgRNA L2FC (+ATc/–ATc) TnSeq Gene Essentiality Predictions (1, 2) Essential Growth Defect Non-Essential Growth Advantage Unknown Operon Legend (3) Operon (1) PMID: 28096490 (2) PMID: 31388080 (3) PMID: 26536359 MSMEG5223 ispH MSMEG5225 xseA xseB MSMEG5228 MSMEG5229 MSMEG5230 MSMEG5231 MSMEG5232 MSMEG5233
Click the tabs above to view different types of data for this gene. The Vulnerability tab shows CRISPRi fitness data.
DNA and Protein Sequence help

DNA Sequence 

>ms5227_xseB_dna
GCGCGCGGCGACGAGATCCACCGCGCCCGCGCGACGGCGCAGCGCGACATCACCCGTCTGATCGCGGGCGAGACCGACACCATCGGCCACCTCTCGGCGCGGTTGACGGCGCTGGGGCCTGCCGCGACGCTCGCGCGCGGGTACGCCGTGGTGCAGGCGGTGCCCGACACCGGCCCGCCGACAGTGCTGCGTTCGACGGATGACGCCCCGGCGGGCACCCGACTGCGGGTGCGGGTCTCCGACGGCGTGGTCACCGCGCGCAGCGAAGGCACTGAGGACGACGAGACAGGGAGCTCGACATGAAGCCCATTAGTGAACTCGGCTATGAAGACGCGCGTGACGAGTTGGTCGCCGTGGTGCAGCAGCTGGAACAGGGTGGGCTCAGCTTGGATGATTCGCTGCAGCTCTGGGAGCGTGGCGAGGCGCTGGCGAAACGCTGTGAAGAGCACTTAGCCGGAGCGCGTCAGCGCGTCGAGCAGGCGATCGCCGCCCGCGAGGCCGACGAGGACTGA

Protein Sequence 

>Ms5227_XseB_protein
MKPISELGYEDARDELVAVVQQLEQGGLSLDDSLQLWERGEALAKRCEEHLAGARQRVEQAIAAREADED

Essentiality:

Call Condition Type Source Notes
Unknown in vitro CRISPRi [Bosch & DeJesus et al. (2021)]
Non Essential in vitro TnSeq [Dragset et al. (2019)]

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