MSMEG5406
ms5406
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M. smegmatis · MC2-155
[AlphaFold] [Orthologs] [Phyre2] [UniProt] [MycoBrowser] [TnSeq DB] [SeqHub]
MC2-155 Coordinates: 5487002 – 5487118
Vulnerability Index (VI):
M. tuberculosis homologs
M. abscessus homologs
background  +5   0  -5 -10 -15 sgRNA L2FC (+ATc/–ATc) TnSeq Gene Essentiality Predictions (1, 2) Essential Growth Defect Non-Essential Growth Advantage Unknown Operon Legend (3) Operon (1) PMID: 28096490 (2) PMID: 31388080 (3) PMID: 26536359 cadA MSMEG5404 MSMEG5405 MSMEG5406 MSMEG5407 lgt MSMEG5409 MSMEG5410
Click the tabs above to view different types of data for this gene. The Vulnerability tab shows CRISPRi fitness data.
DNA and Protein Sequence help

DNA Sequence 

>ms5406_MSMEG5406_dna
TCTACGACAGCCACGTCGCGCAACTGCTCGATGAGGCGATCTACCACATCGAACATCTGCGACTCGGCGTTCGCGACGGCACCGCCTGAGCCAGATCCGCCTGCGGGCAAGAGAATTTCATTTGCCGTCGCACAGTCGACACACACCTGAGGCCGCGGTGACAAAACGCCGAGTGATCACTGGAATCCTTTATTTTCACCCTGCGCCGAACTATTGTTGAGTTGTTATATGTTGATGTCCGCCTGAGCTCGGGCGATTTGCTACCGCGCAGTACCAGCGACGCTTGGGCACGTTAGGAGTTGAGCAACGATGCGCATCGCAACCAAGGGAAACTGCACCTGTCGCTGCAACGCATGCGACGGAGGCCACCACTGCGGAAACCCGCCGAACTGCAACGTACGGCGCTGACGCCGTAG

Protein Sequence 

>Ms5406_MSMEG5406_protein
LSNDAHRNQGKLHLSLQRMRRRPPLRKPAELQRTALTP

Essentiality:

Call Condition Type Source Notes
Unknown in vitro CRISPRi [Bosch & DeJesus et al. (2021)]
Non Essential in vitro TnSeq [Dragset et al. (2019)]

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