MSMEG6550
ms6550
-
M. smegmatis · MC2-155
[AlphaFold] [Orthologs] [Phyre2] [UniProt] [MycoBrowser] [TnSeq DB] [SeqHub]
MC2-155 Coordinates: 6605939 – 6606169
Vulnerability Index (VI):
M. tuberculosis homologs
M. abscessus homologs
background  +5   0  -5 -10 -15 sgRNA L2FC (+ATc/–ATc) TnSeq Gene Essentiality Predictions (1, 2) Essential Growth Defect Non-Essential Growth Advantage Unknown Operon Legend (3) Operon (1) PMID: 28096490 (2) PMID: 31388080 (3) PMID: 26536359 MSMEG6546 MSMEG6547 MSMEG6548 MSMEG6549 MSMEG6550 MSMEG6551 MSMEG6552 MSMEG6553 MSMEG6554
Click the tabs above to view different types of data for this gene. The Vulnerability tab shows CRISPRi fitness data.
DNA and Protein Sequence help

DNA Sequence 

>ms6550_MSMEG6550_dna
AGTCGCTGTCGTCGGAACCGGCCTGTTCCTGCTCAACGTCAGCCGGCAGCCTGAACCAACCGCGTCTGGAAACACGCCTGCCGCGACATCGACCGCAACGGCACCCACGGGTACCGCCGCGGTGTCCCCGGCGCCCGCGGCACCGCCCGCCACGCCCACGACCCCCGCGCCGCGCCCCTTCGCCGACCGCGAGGACTTCGTCGCCGATATCCCCACCAAGACCGGCAACATCGCGCTGGAGATCCGCGTCGACGGCGCCAAGGCACGCGCCTACGCATGTGACAACAAGGGCATCGAGACGTGGATGTGGGGTACCGCCGAGAACGGCGTGCTCAAGCTGGCCGACCAGGCCAAGACCTCCGAACTCAACGGCACGCATCAGGGCAATACCGTCGTCGGCAACCTGCGCATCAACGACAAGAACTGGGACTTCACCGCCGTACCGGGAGCCACCAGTGTCTTCTGATCCCGATTTCTACTCGGCGCCCACCCGGCCCGCGCCGGTCGTCACACCCGCGGGCGCCTCGATGA

Protein Sequence 

>Ms6550_MSMEG6550_protein
VDVGYRRERRAQAGRPGQDLRTQRHASGQYRRRQPAHQRQELGLHRRTGSHQCLLIPISTRRPPGPRRSSHPRAPR

Essentiality:

Call Condition Type Source Notes
Unknown in vitro CRISPRi [Bosch & DeJesus et al. (2021)]
Non Essential in vitro TnSeq [Dragset et al. (2019)]

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