ctaD
mL1728c
PROBABLE CYTOCHROME C OXIDASE POLYPEPTIDE I CTAD (CYTOCHROME AA3 SUBUNIT 1)
M. leprae · TN
[TnSeq DB] [SeqHub]
TN Coordinates: 2084630 – 2086354
Vulnerability Index (VI):
Click the tabs above to view different types of data for this gene. The Vulnerability tab shows CRISPRi fitness data.
DNA and Protein Sequence help

DNA Sequence 

>mL1728c_ctaD_dna
GGAGCTGTTGACAGCCGAAGCGCTCTCGTCGGGAGAACTCAAGGCCATCCGTCCATACCCGGCCCGCACTGGTCCCAAAGGGAACCTCGTATATAAGCTGATCACCACTACCGATCACAAGATGATCGGTATCATGTACTGTGTTGCCTGCTTCATCTTCTTCTTTGTGGGCGGCTTGCTGGCGTTGCTGATGCGTACCGAGTTGGCCGCACCTGGCTTGCAGTTCTTGTCCAATGAACAGTTCAACCAGCTGTTCACCATGCACGGCACGATCATGTTGCTTTTCTATGCCACCCCTATAGTGTTTGGCTTTGCCAACCTGGTGCTGCCGCTGCAAATCGGTGCACCCGACGTGGCATTCCCACGGCTGAATGCCTTTTCGTTCTGGTTGTTCTTGTTCGGCGCCGCCATCGGGATGGCCGGTTTCATCACACCAGGTGGGGCCGCCGACTTCGGCTGGACCGCCTATACGCCGTTGACCGACGCCATCCACTCTCCCGGTGTCGGCGGCGACCTGTGGATTATGGGTTTGATTGTCGCCGGTTTGGGCACCATCTTGGGTGCGGTTAACATGATCACCACCGTGGTCTGCCTGCGCGCGCCCGGGATGACGATGTTCCGGATGCCGATCTTCACCTGGAATATCTTGGTGACATCGATCCTGGTGCTGATTGCGTTCCCCCTGCTCACTGCTGCGCTTTTTGGGTTGGCCGCCGACCGGCATCTGGGAGCTCACATCTACGACGCGGCCAACGGCGGAGTGCTGTTGTGGCAGCACCTGTTCTGGTTCTTCGGCCACCCCGAAGTTTACATCATCGCGCTGCCGTTCTTCGGGATCGTCTCAGAGATCTTCCCGGTCTTTTCCCGCAAGCCCATCTTCGGCTACACCACGCTGGTTTACGCGACGTTGTCTATCGCTGCGTTATCGGTCGCGGTGTGGGCGCACCACATGTTCGCCACCGGTGCTGTTCTGCTGCCGTTCTTTTCGTTTATGACGTATTTGATCGCGGTGCCGACCGGGATCAAATTCTTTAACTGGGTCGGCACAATGTGGAAGGGCCAGTTGACTTTTGAGACGCCGATGTTGTTTTCGGTCGGCTTCGCGGTCACTTTCTTGTTGGGTGGTTTGACTGGCGTGTTGCTAGCCAGCCCGCCGCTGGATTTTCATGTGACTGACAGCTATTTCGTCGTAGCGCATTTCCATTACGTGCTGTTCGGCACTATCGTGTTCTCCACGTTTGCCGGTATCTACTTCTGGTTCCCCAAGATGACCGGTCGGCTGCTTGACGAGCAGCTGGGCAAGCTGCACTTCTGGCTGACGTTCATCGGTTTCCATACCACGTTCTTGGTGCAGCACTGGTTGGGTGACATGGGCATGCCTCGACGCTACGCCGACTATCTGCCCACCGACGGCTTCCAGGGTTTGAATGTTGTCTCGACTATCGGGTCCTTCATCCTGGGTGCGTCGATGTTTCCGTTTGTGTGGAACGTATTTAAGAGTTGGCGCTACGGCGAGGTGGTGACCGTGGACGACCCGTGGGGATACGGCAACTCCCTGGAATGGGCGACCAGTTGTCCGCCGCCGCGGCATAACTTCACTGAGCTGCCCCGGATTCGTTCGGAGCGTCCGGCGTTTGAGCTGCACTACCCGCACATGGTGGAACGATTGCGCGACGAGGCATACGTTGGGCGCCGTCACGCCGAGGAGCTCGTTGAGGTGAGTTT

Protein Sequence 

>ML1728c_CtaD_protein
GAVDSRSALVGRTQGHPSIPGPHWSQREPRI_ADHHYRSQDDRYHVLCCLLHLLLCGRLAGVADAYRVGRTWLAVLVQ_TVQPAVHHARHDHVAFLCHPYSVWLCQPGAAAANRCTRRGIPTAECLFVLVVLVRRRHRDGRFHHTRWGRRLRLDRLYAVDRRHPLSRCRRRPVDYGFDCRRFGHHLGCG_HDHHRGLPARARDDDVPDADLHLEYLGDIDPGADCVPPAHCCAFWVGRRPASGSSHLRRGQRRSAVVAAPVLVLRPPRSLHHRAAVLRDRLRDLPGLFPQAHLRLHHAGLRDVVYRCVIGRGVGAPHVRHRCCSAAVLFVYDVFDRGADRDQIL_LGRHNVEGPVDF_DADVVFGRLRGHFLVGWFDWRVASQPAAGFSCD_QLFRRSAFPLRAVRHYRVLHVCRYLLLVPQDDRSAA_RAAGQAALLADVHRFPYHVLGAALVG_HGHASTLRRLSAHRRLPGFECCLDYRVLHPGCVDVSVCVERI_ELALRRGGDRGRPVGIRQLPGMGDQLSAAAA_LH_AAPDSFGASGV_AALPAHGGTIARRGIRWAPSRRGAR_GEF

No essentiality data available for this gene.

AlphaFold Protein Interactions

Protein–protein interactions (PPIs) were predicted by co-folding CtaD with every other protein in the M. leprae proteome using a pooled-AlphaFold3 based approach (Horia et al.). The size-corrected interface predicted template modeling (sciPTM) score indicates confidence in the predicted interaction: weak evidence (sciPTM > 0.05), intermediate evidence (sciPTM > 0.2), or strong evidence (sciPTM > 0.4).

14 proteins show strong predicted evidence for PPIs

23 show intermediate predicted evidence for PPIs

155 show weak predicted evidence for PPIs

View all pooled AlphaFold results for CtaD

Use of these data is subject to the AlphaFold Server Output Terms of Use.

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