rpmJ
ms1520
-
M. smegmatis · MC2-155
[AlphaFold] [Orthologs] [UniProt] [MycoBrowser] [TnSeq DB] [SeqHub]
MC2-155 Coordinates: 1611901 – 1612014
Vulnerability Index (VI):
M. tuberculosis homologs rpmJ
M. abscessus homologs rpmJ
 +5   0  -5 -10 -15 sgRNA L2FC (+ATc/–ATc) TnSeq Gene Essentiality Predictions (1, 2) Essential Growth Defect Non-Essential Growth Advantage Unknown Operon Legend (3) Operon TSS Legend ? Ju, 2024 (4) Li, 2017 (5) (1) PMID: 28096490 (2) PMID: 31388080 (3) PMID: 26536359 (4) PMID: 38418874 (5) PMID: 29326668 MSMEG1516 MSMEG1517 MSMEG1518 infA rpmJ rpsM rpsK rpsD rpoA MSMEG1525
Click the tabs above to view different types of data for this gene. The Vulnerability tab shows CRISPRi fitness data.
DNA and Protein Sequence help

DNA Sequence 

>ms1520_rpmJ_dna
CAAGAAAGACGGTGCCATCGAGGTCGAGGGCCGCGTGATCGAACCTCTGCCCAATGCGATGTTCCGCATTGAGCTGGAGAACGGACACAAGGTTCTGGCCCACATCAGCGGCAAGATGCGGCAGCACTACATCCGCATCCTGCCCGAGGACCGCGTCGTGGTGGAGCTCTCTCCGTACGACCTGTCCCGGGGCCGCATCGTGTACCGGTACAAGTGACAACCAGCCCGACAAGGTAACGACGAGAACTTGGCGCGCTCTACAAGCGCGTCAACGAGAGATCAGAAGGATCGAAGAAGCCGTGAAGGTGAACCCGAGCGTCAAGCCCATCTGCGACAAGTGCAGGGTGATCCGCCGGCATGGGCGGGTCATGGTGATCTGCAGCGATCCGCGCCACAAGCAGCGGCAGGGCTGA

Protein Sequence 

>Ms1520_RpmJ_protein
VKVNPSVKPICDKCRVIRRHGRVMVICSDPRHKQRQG

Essentiality:

Call Condition Type Source Notes
Unknown in vitro CRISPRi [Bosch & DeJesus et al. (2021)]
Unknown in vitro TnSeq [Dragset et al. (2019)]

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