MSMEG4404
ms4404
-
M. smegmatis · MC2-155
[AlphaFold] [Orthologs] [UniProt] [MycoBrowser] [TnSeq DB] [SeqHub]
MC2-155 Coordinates: 4494217 – 4494771
Vulnerability Index (VI):
M. tuberculosis homologs
M. abscessus homologs
 +5   0  -5 -10 -15 sgRNA L2FC (+ATc/–ATc) TnSeq Gene Essentiality Predictions (1, 2) Essential Growth Defect Non-Essential Growth Advantage Unknown Operon Legend (3) Operon TSS Legend ? Ju, 2024 (4) Li, 2017 (5) (1) PMID: 28096490 (2) PMID: 31388080 (3) PMID: 26536359 (4) PMID: 38418874 (5) PMID: 29326668 MSMEG4401 MSMEG4402 MSMEG4403 MSMEG4404 MSMEG4405 MSMEG4406 MSMEG4407 MSMEG4408 MSMEG4409 MSMEG4410 MSMEG4411
Click the tabs above to view different types of data for this gene. The Vulnerability tab shows CRISPRi fitness data.
DNA and Protein Sequence help

DNA Sequence 

>ms4404_MSMEG4404_dna
ACGGGCGTGAGATCGATGATGACGGTGACGTACTTGTCGCCGCGGCGAGTGTGCCGCCACACGTGCTCATCGACGCCGATCACCGCGACGCCATCGAACCGGGCCGGATCGGCGATGAGCACCCGCTGACCTTCGGCGAGCACGGCGTTGTTGGCAGTGTTCCACGACACCGCAAGCGCCTCGGCGACCCGGGCCACCGACAGGTGTTGGCAGACAAGGGCTTCCAGCGCCCACCGCAGAGCACGCCGGGACAGCCTGGCCCGCGGTTCGGCTGCGGCGCTGGCATCCTGGCGCCACACATGAGCGCAGCCGGCGCAACGGTAACGGCGGATCGTGACCAGCAAAGCCGTGGGTCGCCACCCGAACGGTTCATGAGCCAACGTGCGAGTCACGCTGTCACGTACAACGCCTTCTTCGCCGCAGCGGCGGCACCACCGATCCTCATCGGCGACCCGGCACGCCAGCACGGCCCGATCAGGGTCGAGGCGTTGGCCGGTCACCTCCAACCCGAGCTCGTCGAGGCGGCAGAAAGTCGTCAGGTCAGCGCAGGCGAAGCCCGCCCGACCGGTAGCGTCAGGCACGTCGAGGTCTTTCAGATGGATGGCGTAGGAACCTCCATCATCGGAAGACCTCGACCCCTATCCCGGCACCGACGCGCCGACGACCTCTACACCCTCAACTGCGAAGAGCCCCCAAACGCGCAGCATCTGCGACGAACCGATGCGGCCGGACGGAAGCTGGGTGCGCTATCGCATGGTGTGGATACCGGCTCATTACGTGCCCATCCGCACGAGTTGCGGCACCTACAGTTGCACCACGAGTGGCGGCTACTGGCAAGACGAGCAGGTGTTTGA

Protein Sequence 

>Ms4404_MSMEG4404_protein
MSAAGATVTADRDQQSRGSPPERFMSQRASHAVTYNAFFAAAAAPPILIGDPARQHGPIRVEALAGHLQPELVEAAESRQVSAGEARPTGSVRHVEVFQMDGVGTSIIGRPRPLSRHRRADDLYTLNCEEPPNAQHLRRTDAAGRKLGALSHGVDTGSLRAHPHELRHLQLHHEWRLLARRAGV

Essentiality:

Call Condition Type Source Notes
Unknown in vitro CRISPRi [Bosch & DeJesus et al. (2021)]
Growth Advantage in vitro TnSeq [Dragset et al. (2019)]

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