rpmB
ms6068
-
M. smegmatis · MC2-155
[AlphaFold] [Orthologs] [UniProt] [MycoBrowser] [TnSeq DB] [SeqHub]
MC2-155 Coordinates: 6133469 – 6133705
Vulnerability Index (VI):
M. tuberculosis homologs rpmB2, rpmB1, Rv2975A
M. abscessus homologs rpmB.2, rpmB
 +5   0  -5 -10 -15 sgRNA L2FC (+ATc/–ATc) TnSeq Gene Essentiality Predictions (1, 2) Essential Growth Defect Non-Essential Growth Advantage Unknown Operon Legend (3) Operon TSS Legend ? Ju, 2024 (4) Li, 2017 (5) (1) PMID: 28096490 (2) PMID: 31388080 (3) PMID: 26536359 (4) PMID: 38418874 (5) PMID: 29326668 MSMEG6062 MSMEG6063 MSMEG6064 rpsR rpsN rpmG rpmB MSMEG6069 rpmE2 MSMEG6071 MSMEG6072
Click the tabs above to view different types of data for this gene. The Vulnerability tab shows CRISPRi fitness data.
DNA and Protein Sequence help

DNA Sequence 

>ms6068_rpmB_dna
AGGATCAGCAGATCGTCACGCACGGTGCACGAGACGCATCCGTGCACCAGCTCAAGTACCCACTGAGAGCTGTCGACCGAGCTGCTCACGGTGCGGACGACGACATGGCCGTCGAAGGTGTGGCTGACGAGCAGGGTGCCAGGTGCCTTGAGCAGTTCCTCGACGACGGCCCGACCGGTTCCGCGGGCGTCATCCTGTCCGGCGACCAGCACTACCGGCGTACGCATGGGACCTCCCGGTTTGCTTATTGAAAACGATTGTCATTATCGTACGACGGTACCGCACGACGAAGGAGAGTCAATGTCGGCCCACTGCCAGGTGACCGGGCGCGGCCCCGGATTCGGGAACTCGGTGTCGCATTCGCACCGACGCACCCCGAGACGCTGGGACCCCAATATCCAGAACAAGACCTATTACCTGCCGTCGGAGGGACGACGAATCCGGCTGCGGGTCAGCGCAAAAGGCATCAAGGTGATCGACCGTGACGGCATCGAGGCCGTCGTCGCCCGAATGCGTGCACGGGGGGAGAAGGTCTGA

Protein Sequence 

>Ms6068_RpmB_protein
MSAHCQVTGRGPGFGNSVSHSHRRTPRRWDPNIQNKTYYLPSEGRRIRLRVSAKGIKVIDRDGIEAVVARMRARGEKV

Essentiality:

Call Condition Type Source Notes
Unknown in vitro CRISPRi [Bosch & DeJesus et al. (2021)]
Non Essential in vitro TnSeq [Dragset et al. (2019)]

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