MSMEG1016
ms1016
-
M. smegmatis · MC2-155
[AlphaFold] [Orthologs] [Phyre2] [UniProt] [MycoBrowser] [TnSeq DB] [SeqHub]
MC2-155 Coordinates: 1086080 – 1086643
Vulnerability Index (VI):
M. tuberculosis homologs Rv3054c
M. abscessus homologs MAB3417c, MAB3645
background  +5   0  -5 -10 -15 sgRNA L2FC (+ATc/–ATc) TnSeq Gene Essentiality Predictions (1, 2) Essential Growth Defect Non-Essential Growth Advantage Unknown Operon Legend (3) Operon (1) PMID: 28096490 (2) PMID: 31388080 (3) PMID: 26536359 MSMEG1013 dinB MSMEG1015 MSMEG1016 MSMEG1017 MSMEG1019
Click the tabs above to view different types of data for this gene. The Vulnerability tab shows CRISPRi fitness data.
DNA and Protein Sequence help

DNA Sequence 

>ms1016_MSMEG1016_dna
GGTGCCCTTGCCGACGCCGGCCTCGACGGCGATGTCGTCGGTGCTCACGGCGTCGGGTCCGCGCTCGGCGATGAGCCGGCGCGCCGCGTCGAGGATCGCGGCCCGGTTCCGGGCGGCGTCGCCGCGCTCCTGCGGCGCGCGGTCGGTGACCTCGAGCCGGACGGAGCGGTCAGTGGCTGCCACGACAGCCACCTTATCTGTGAATTTCTGTGAATCCGGCCGAGTGGGAATGAATCGGACTGCGGTCCGGTTGATCGGGGACGAAACCCGACCACAAGAATCTCATGAAAGGACGGCTCATGGCCGAAATCAAGGTGTTGGTACTCGTCGGCAGCCTCCGGGCGGCGTCCATCAACCGCCAACTCGCCGAACTGGCAGTCGAGACCGCGCCCGACGGTGTGGACCTGCAGGTGTTCGACCGGCTGGCCGAGGTGCCGTTCTACAACGAAGACATCGACACCGCTGATGTGCCCGAGCCGGCCGCGGCGCTGCGTGCCGCGGCGGTCGAGGCGGACGCAGCCCTGCTCGTCACCCCCGAGTACAACGCCACCATCCCCGCCGTCCTCAAGAACGCCATCGACTGGCTGTCGCGGCCGTACGGCAGTGGCGCGCTGCACGGCAAGCCGGCCGCCGTGATCGGCGCCGCGCACGGGCGCTACGGCGGTGTGTGGGCGCACGACGAGACCCGCAAGTCGCTGGGCGTCGCAGGCCCGCGCGTGGTCGAGGACGTCAAGCTGTCGATCGCAGCGTCGACGCTGGACGACAAGCACCCGCGCGAGAACGCCGAGGTGACCGTGAGTGTCCGGGAAGCCGTCGCCAAGCTTGTGGCGGCCGTCGCCGAGGTGCCCGCCGGGGTCGCCTGA

Protein Sequence 

>Ms1016_MSMEG1016_protein
MAEIKVLVLVGSLRAASINRQLAELAVETAPDGVDLQVFDRLAEVPFYNEDIDTADVPEPAAALRAAAVEADAALLVTPEYNATIPAVLKNAIDWLSRPYGSGALHGKPAAVIGAAHGRYGGVWAHDETRKSLGVAGPRVVEDVKLSIAASTLDDKHPRENAEVTVSVREAVAKLVAAVAEVPAGVA

Essentiality:

Call Condition Type Source Notes
Unknown in vitro CRISPRi [Bosch & DeJesus et al. (2021)]
Growth Advantage in vitro TnSeq [Dragset et al. (2019)]

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