MSMEG1013
ms1013
-
M. smegmatis · MC2-155
[AlphaFold] [Orthologs] [Phyre2] [UniProt] [MycoBrowser] [TnSeq DB] [SeqHub]
MC2-155 Coordinates: 1083088 – 1084272
Vulnerability Index (VI):
M. tuberculosis homologs
M. abscessus homologs MAB1548c
background  +5   0  -5 -10 -15 sgRNA L2FC (+ATc/–ATc) TnSeq Gene Essentiality Predictions (1, 2) Essential Growth Defect Non-Essential Growth Advantage Unknown Operon Legend (3) Operon (1) PMID: 28096490 (2) PMID: 31388080 (3) PMID: 26536359 MSMEG1010 MSMEG1011 MSMEG1012 MSMEG1013 dinB MSMEG1015 MSMEG1016 MSMEG1017
Click the tabs above to view different types of data for this gene. The Vulnerability tab shows CRISPRi fitness data.
DNA and Protein Sequence help

DNA Sequence 

>ms1013_MSMEG1013_dna
GCGAGATGGACTCGGCGGTGCGCGATCTCGCGTTGCAGACGCTGGCCGAGATCGTCGAACAGGGCCGCATCGTCACGCGCGTCGCGGTCACGGTGCGCACCAGCACCTTCTACACCCGCACCAAGATCCGCAAGCTTCCCGCGCCGAGCACCGACGCCGGTCAGATCGTCGACACGGCGCTGGCGGTGCTGGATCAGTTCGAACTCGACCGTCCGGTCCGGTTGCTCGGGGTGCGCCTGGAACTCGCGATGGATGACGTGCCCCGCCCCGCTGTCACTGCAGGCACCTAACCTCGACGCCATGCTGCAGACCGTCGCCATCCGTGGCTACCGCTCACTGCGCGAGGTGGTCCTTCCGCTGACCGAGCTCACGGTGATCACCGGCGCCAACGGCACCGGGAAGTCCTCGGTGTACCGGGCGCTGCGACTGCTCGCCGATTGCGGGCGTGGACAGGTGATCGGCTCACTCGCGCGTGAGGGTGGCCTGCAGTCGGTGCTGTGGGCGGGGCCTGAGCGTCCATCCGAGGAGGCACAGGGCGCCACCCGGACGCGTCCCGTCTCGCTCGAAATGGGTTTCGCGGCAGACGACTTCGGATACGTGGTCGATCTCGGCCTGCCTCAGATGGCAGGCGCGCCGGCCCACCGGACCCCCTCGGCGTTCACCCTCGATCCCGAGATCAAACGCGAGGCCGTGTTCGCCGGACCGGTGCTGCGCCCGAGTTCGACGCTGGTGCGACGCATCAGGGAGTTCGCCGAGACTGCCGCCGAATCCGGGCGCGGCTTCGACGAACTGAGCCGATCGCTGCCCGCGTATCGCAGCGTGCTCGCCGAGTACGCCCACCCCCACGCGCTGCCCGAGTTGTCCGCGGTCTCAGAACGCCTGCGCGACTGGCGTTTCTACGACGGTTTCCGCGTGGATGCGGGCGCTCCCGCCCGCCACCCGCACGTCGGCACCCGCACCCCGGTGTTGTCCGACGACGGCTCCGATCTGGCGGCAGCCGTGCAGACCATCATCGAAGCGGGCCTCGACGACCTGCAGCGGGCCGTGGCCGACGCGTTCGACGGCGCCAGGGTGTCCGTCGCGGCCAGCGACGGCCTGTTCGACCTGCAACTGCACCAGCGCGGCATGCTGCGTCCGCTACGGGCTGCCGAACTGTCCGACGGCACACTGCGTTTCCTGCTGTGGGCGGCCGCATTGCTGAGCCCGAGCCCACCGTCGCTCATGGTGCTCAACGAACCGGAGACGTCACTGCATCCCGACCTCGTGCGTCCGCTGGCGTCGCTGATCCGCACCGCGGCCACCCGGACGCAGGTCGTGGTGGTCACGCACTCGCGTGCGCTGCTGGAGTTCCTCGACACCACCCCGATCGGCGACGATGGTCCGGGTGGCGCCGTCGAGATCGAGTTGTACAAGCAGTGGGGCGAGACCAAGGTGACCGGGCAGGGCCTGCTCTCGACGCCGTCGTGGCACTGGGGAAACCGCTAG

Protein Sequence 

>Ms1013_MSMEG1013_protein
MLQTVAIRGYRSLREVVLPLTELTVITGANGTGKSSVYRALRLLADCGRGQVIGSLAREGGLQSVLWAGPERPSEEAQGATRTRPVSLEMGFAADDFGYVVDLGLPQMAGAPAHRTPSAFTLDPEIKREAVFAGPVLRPSSTLVRRIREFAETAAESGRGFDELSRSLPAYRSVLAEYAHPHALPELSAVSERLRDWRFYDGFRVDAGAPARHPHVGTRTPVLSDDGSDLAAAVQTIIEAGLDDLQRAVADAFDGARVSVAASDGLFDLQLHQRGMLRPLRAAELSDGTLRFLLWAAALLSPSPPSLMVLNEPETSLHPDLVRPLASLIRTAATRTQVVVVTHSRALLEFLDTTPIGDDGPGGAVEIELYKQWGETKVTGQGLLSTPSWHWGNR

Essentiality:

Call Condition Type Source Notes
Unknown in vitro CRISPRi [Bosch & DeJesus et al. (2021)]
Growth Advantage in vitro TnSeq [Dragset et al. (2019)]

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