rpmD
ms1473
-
M. smegmatis · MC2-155
[AlphaFold] [Orthologs] [Phyre2] [UniProt] [MycoBrowser] [TnSeq DB] [SeqHub]
MC2-155 Coordinates: 1565512 – 1565697
Vulnerability Index (VI):
M. tuberculosis homologs rpmD
M. abscessus homologs rpmD
background  +5   0  -5 -10 -15 sgRNA L2FC (+ATc/–ATc) TnSeq Gene Essentiality Predictions (1, 2) Essential Growth Defect Non-Essential Growth Advantage Unknown Operon Legend (3) Operon (1) PMID: 28096490 (2) PMID: 31388080 (3) PMID: 26536359 rplX rplE rpsN rpsH rplF rplR rpsE rpmD rplO MSMEG1475 sppA
Click the tabs above to view different types of data for this gene. The Vulnerability tab shows CRISPRi fitness data.
DNA and Protein Sequence help

DNA Sequence 

>ms1473_rpmD_dna
GGTGTCGTGATGCTGCGCCCGGCCAGCCCGGGTACCGGTGTGATCGCCGGCGGTGCCGCTCGTGCGGTGCTGGAGTGCGCGGGCGTGCACGACATCCTGGCCAAGTCGCTGGGTAGCGACAACGCGATCAACGTGGTTCACGCCACCGTTGCCGCGCTGAAGCTGCTGCAGCGGCCCGAGGAAGTGGCGGCCCGTCGCGGTCTGCCCATCGAGGACGTTGCGCCGGCCGGCATGCTGAAGGCCCGGCGCGAGAGTGAAGCGCTGGCCGCCGCGGCTGCGCGTGAGGGATCGGCATAACCATGGCAGAGCTGAAGATCACCCAGGTGCGTAGCACCATCGGGGCGCGCTGGAAGCAGCGTGAGAGCCTGCGGACCCTGGGCCTCAAGAAGATCCGCCAGTCGGTGGTGCGTGAGGACAACGCCCAGACCCGTGGCCTCATCAATACCGTTCACCACCTCGTTGAAGTAGAGGAGGTTGGCAAGTGA

Protein Sequence 

>Ms1473_RpmD_protein
MAELKITQVRSTIGARWKQRESLRTLGLKKIRQSVVREDNAQTRGLINTVHHLVEVEEVGK

Essentiality:

Call Condition Type Source Notes
Unknown in vitro CRISPRi [Bosch & DeJesus et al. (2021)]
Essential in vitro TnSeq [Dragset et al. (2019)]

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