MSMEG1862 (MSMEG1862)

background  +5   0  -5 -10 -15 sgRNA L2FC (+ATc/–ATc) TnSeq Gene Essentiality Predictions (1, 2) Essential Growth Defect Non-Essential Growth Advantage Unknown Operon Legend (3) Operon (1) PMID: 28096490 (2) PMID: 31388080 (3) PMID: 26536359 MSMEG1857 MSMEG1858 MSMEG1859 MSMEG1860 MSMEG1861 MSMEG1862 MSMEG1863 MSMEG1864 MSMEG1865 MSMEG1866
Species: M. smegmatis
Strain: MC2-155
PATRIC Annotation: -
Synonyms:
M. tuberculosis homologs RVBD3430c
M. abscessus homologs
Gene Start: 1938555
Gene End: 1939568
Vulnerability Index (VI):
VI Lower Bound:
VI Upper Bound:
[AlphaFold] [Orthologs] [Phyre2] [UniProt] [MycoBrowser] [TnSeq DB] [Gaia]

Essentiality:

Call Condition Type Source Notes
Unknown in vitro CRISPRi [Bosch & DeJesus et al. (2021)]
Non Essential in vitro TnSeq [Dragset et al. (2019)]


DNA and Protein Sequence help

DNA Sequence

GGCCTGTACGACCAACGATGGTGGGGCGTACCTGCGCGGTGAGGGGTTGTATTCCTCGCAGATCGCCGAGTGGCGCAAACAACGCGATGCTGGGGTGTTGGAAGGCAAGGCACCTGGGGAGAAGGTCGGTAAACTCACCCGCGAGCAGGCCGAGATCGCCCGCCTGAAAAAGGAACTCGCCCAGGCCAATAATCGGCTGGCGACCACCGAGGCTGCCCTGGGGATCATGGGAAAAGCACACGCGCTCTTGGAGTCTCTCTCCGAGAGCGCGGACACCGACACGCCGCCGACCAAGCGCTGATGGATGCCTACAACGATCTGCGGGATATCCAGATTCCGACCCGCAAGGCCGCGGAGGTGACCGGCATGCACCGCTCGACGGCCACTCGACGCGCCAAACCCGCGCCGGCGCCTGCCGATCGGGCACCACGACCGGTCCCGGTCAACAAGCTCACCGAGTCCGAATGCGCCCGGGTGGTTGAGGTGCTCAACAGTGCCCGGTTCGTCGATGCCGCGCCGATGCAGGTGTGGGCCACGTTGCTCGATGAAGGCAGCTACCTGTGTTCGGTGTCGACGATGTACCGCGTCCTCAATGCCAACAAGCTGGTCAAGGAGCGCCGTCGGCTGGCCCGGCACCGCAAAGCGGTCTGCCCGGAACTGGTGGCCACCGCGCCGCGGCAGGTGTATTCGTGGGACATCACCAAACTGGCCGGCCCGGTCAAAGGGGTCTACTACGACGCCTACGTGATGATCGACATTTACTCGCGTTACATCGTCGGGGTCCATGTGCACGCCCGCGAATGCGGCCAGCTGGCCAAGGAGATGATGGAACAGATCTTCGGCACCTACGGCATCCCACACGTCGTGCACGCTGATCGGGGCACCTCGATGACCAGCAACACCGTCGCCGGACTGCTCTCGGATCTGGGCGTCATCCGCTCGCATTCGCGGCCCAAGGTATCCAACGACAACCCCTACAGCGAGTCCTGGTTCAAGACCTTGAAGTATGCGCCGGCGTTCCCGGAACGCTTCGAATCCATCCATCACGCGAGGGATTTCATGGACCGATTCGTGCAGTGGTACAACCATGAACACCGCCACAGCGGCATCGGGCTGCACACACCCGCCGATGTGTTCTACGGCCTCGCCGGCGGGAAAGACACCCAGCGCCGAGCCGTGCTCGCCGACGCCAGGGCGCGCCACCCACGCCGATTCGGCCGCGACACCGCACCCAAGGTCATCGACCTACCTGAATCCGCGGCGATCAACCCACCCAAACCGGCCGAACAGGAGACCGAAACGGAAGCCGCTTAA

Protein Sequence

MDAYNDLRDIQIPTRKAAEVTGMHRSTATRRAKPAPAPADRAPRPVPVNKLTESECARVVEVLNSARFVDAAPMQVWATLLDEGSYLCSVSTMYRVLNANKLVKERRRLARHRKAVCPELVATAPRQVYSWDITKLAGPVKGVYYDAYVMIDIYSRYIVGVHVHARECGQLAKEMMEQIFGTYGIPHVVHADRGTSMTSNTVAGLLSDLGVIRSHSRPKVSNDNPYSESWFKTLKYAPAFPERFESIHHARDFMDRFVQWYNHEHRHSGIGLHTPADVFYGLAGGKDTQRRAVLADARARHPRRFGRDTAPKVIDLPESAAINPPKPAEQETETEAA 
Gene not present in the reference CRISPRi library.

Specific References

General References