MSMEG1862
ms1862
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M. smegmatis · MC2-155
[AlphaFold] [Orthologs] [Phyre2] [UniProt] [MycoBrowser] [TnSeq DB] [SeqHub]
MC2-155 Coordinates: 1938555 – 1939568
Vulnerability Index (VI):
M. tuberculosis homologs Rv3430c
M. abscessus homologs
background  +5   0  -5 -10 -15 sgRNA L2FC (+ATc/–ATc) TnSeq Gene Essentiality Predictions (1, 2) Essential Growth Defect Non-Essential Growth Advantage Unknown Operon Legend (3) Operon (1) PMID: 28096490 (2) PMID: 31388080 (3) PMID: 26536359 MSMEG1857 MSMEG1858 MSMEG1859 MSMEG1860 MSMEG1861 MSMEG1862 MSMEG1863 MSMEG1864 MSMEG1865 MSMEG1866
Click the tabs above to view different types of data for this gene. The Vulnerability tab shows CRISPRi fitness data.
DNA and Protein Sequence help

DNA Sequence 

>ms1862_MSMEG1862_dna
GGCCTGTACGACCAACGATGGTGGGGCGTACCTGCGCGGTGAGGGGTTGTATTCCTCGCAGATCGCCGAGTGGCGCAAACAACGCGATGCTGGGGTGTTGGAAGGCAAGGCACCTGGGGAGAAGGTCGGTAAACTCACCCGCGAGCAGGCCGAGATCGCCCGCCTGAAAAAGGAACTCGCCCAGGCCAATAATCGGCTGGCGACCACCGAGGCTGCCCTGGGGATCATGGGAAAAGCACACGCGCTCTTGGAGTCTCTCTCCGAGAGCGCGGACACCGACACGCCGCCGACCAAGCGCTGATGGATGCCTACAACGATCTGCGGGATATCCAGATTCCGACCCGCAAGGCCGCGGAGGTGACCGGCATGCACCGCTCGACGGCCACTCGACGCGCCAAACCCGCGCCGGCGCCTGCCGATCGGGCACCACGACCGGTCCCGGTCAACAAGCTCACCGAGTCCGAATGCGCCCGGGTGGTTGAGGTGCTCAACAGTGCCCGGTTCGTCGATGCCGCGCCGATGCAGGTGTGGGCCACGTTGCTCGATGAAGGCAGCTACCTGTGTTCGGTGTCGACGATGTACCGCGTCCTCAATGCCAACAAGCTGGTCAAGGAGCGCCGTCGGCTGGCCCGGCACCGCAAAGCGGTCTGCCCGGAACTGGTGGCCACCGCGCCGCGGCAGGTGTATTCGTGGGACATCACCAAACTGGCCGGCCCGGTCAAAGGGGTCTACTACGACGCCTACGTGATGATCGACATTTACTCGCGTTACATCGTCGGGGTCCATGTGCACGCCCGCGAATGCGGCCAGCTGGCCAAGGAGATGATGGAACAGATCTTCGGCACCTACGGCATCCCACACGTCGTGCACGCTGATCGGGGCACCTCGATGACCAGCAACACCGTCGCCGGACTGCTCTCGGATCTGGGCGTCATCCGCTCGCATTCGCGGCCCAAGGTATCCAACGACAACCCCTACAGCGAGTCCTGGTTCAAGACCTTGAAGTATGCGCCGGCGTTCCCGGAACGCTTCGAATCCATCCATCACGCGAGGGATTTCATGGACCGATTCGTGCAGTGGTACAACCATGAACACCGCCACAGCGGCATCGGGCTGCACACACCCGCCGATGTGTTCTACGGCCTCGCCGGCGGGAAAGACACCCAGCGCCGAGCCGTGCTCGCCGACGCCAGGGCGCGCCACCCACGCCGATTCGGCCGCGACACCGCACCCAAGGTCATCGACCTACCTGAATCCGCGGCGATCAACCCACCCAAACCGGCCGAACAGGAGACCGAAACGGAAGCCGCTTAA

Protein Sequence 

>Ms1862_MSMEG1862_protein
MDAYNDLRDIQIPTRKAAEVTGMHRSTATRRAKPAPAPADRAPRPVPVNKLTESECARVVEVLNSARFVDAAPMQVWATLLDEGSYLCSVSTMYRVLNANKLVKERRRLARHRKAVCPELVATAPRQVYSWDITKLAGPVKGVYYDAYVMIDIYSRYIVGVHVHARECGQLAKEMMEQIFGTYGIPHVVHADRGTSMTSNTVAGLLSDLGVIRSHSRPKVSNDNPYSESWFKTLKYAPAFPERFESIHHARDFMDRFVQWYNHEHRHSGIGLHTPADVFYGLAGGKDTQRRAVLADARARHPRRFGRDTAPKVIDLPESAAINPPKPAEQETETEAA

Essentiality:

Call Condition Type Source Notes
Unknown in vitro CRISPRi [Bosch & DeJesus et al. (2021)]
Non Essential in vitro TnSeq [Dragset et al. (2019)]

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