MSMEG1005 (MSMEG1005)

background  +5   0  -5 -10 -15 sgRNA L2FC (+ATc/–ATc) TnSeq Gene Essentiality Predictions (1, 2) Essential Growth Defect Non-Essential Growth Advantage Unknown Operon Legend (3) Operon (1) PMID: 28096490 (2) PMID: 31388080 (3) PMID: 26536359 MSMEG1001 MSMEG1002 MSMEG1003 MSMEG1005 MSMEG1006 MSMEG1007 MSMEG1008 MSMEG1009
Species: M. smegmatis
Strain: MC2-155
PATRIC Annotation: -
Synonyms:
M. tuberculosis homologs RVBD1403c, RVBD1405c, menH, RVBD3038c, RVBD1377c, [+ 1 remaining orthologs]
M. abscessus homologs MAB3930c, MAB3381c, MAB0868c, MAB4613, MAB4018
Gene Start: 1074818
Gene End: 1075633
Vulnerability Index (VI):
VI Lower Bound:
VI Upper Bound:
[AlphaFold] [Orthologs] [Phyre2] [UniProt] [MycoBrowser] [TnSeq DB]

Essentiality:

Call Condition Type Source Notes
Growth Advantage in vitro TnSeq [Akusobi et al. (2022)]
Unknown in vitro CRISPRi [Bosch & DeJesus et al. (2021)]


DNA and Protein Sequence help

DNA Sequence

TCAACTGCGAAGAGCCTGAAATGGGTACTGCCCAACAGCAGTTCCCGCACCACGAGCAGGGTCCAGCGTTCATCGAGCAGTTCCATGGCTTTGGCGACGGGGCAGAACTGGCCATAGGTCGACATGTGCGGCACCTTCCGGACAATTGCGCAACTGCGCACACCTGAGCACAAGTACACCGCGCAAACGTCGCCGAGCCAATACAGAATTTGAACCACAGGTAGTACAGATCTGTTACTGGATTCCTGTACCGGCGCGGCGGGACCATGACTGACACATGCCGAACCGAAGGAGTCACCATGGGCGTCGTCACCGTCGATCGAGAACTTGAGGCCAAACACCGGGCGCTGTGGGCGCTCGGGAACTACGGGGCGATCGCCGCCCATATCGTCGCACCGCTGGGACCCGTCCTCGTCGAGGCCTGCGGTATCGGACCCGGGGACCGGGTGCTCGACATCGCGGCAGGCACGGGCAACGCCTCGATCCCCGCCGCGCTGGCAGGCGCTCAGGTCACCGCGAGCGACCTGTGCCCGCAACTGGTCGACGAGGGCGCACACGAGTCCGCCGAGCGAGGCGTGGACATCACGTGGAAAGAGGCCAACGCCGAGGCGCTGCCGTTCTCCGACGGCGAGTTCGACGTCGTGATGTCCTGCATCGGCGTGATGTTCGCGCCGCATCACGACCAGTCCGCTCGGGAGCTGTTGCGGGTCACGCGTTCCGGTGGACGGATCGGTCTGATCAGCTGGACCCCAGAGGGTTTCATCGGGCAGCTGTTCGCGACCATGAAGCCGTTCGTTCCCGCGCCGCCGCCGGGCGTGTCGCCACCGCCGTTGTGGGGCAACGCCGATCATGTCCGAACGCTGCTCGGCGATGGGATCGAGGACTTCGAGACGCAGCGTCGCTCGTTGACGGTGGACATGTTCGCCGACGGAGCCGCCTTCCGCGACTTCTTCAAGGCCAACTACGGTCCCACCATCGCGGCCTACCGCGCCGTCGGTGACGACGCCGAACGCACCGCGGCGCTCGACGAGGCCATCGCCTTGCTGGGGGACCGATATCTCGATTCCGGTGCCATGCAGTGGGAGTACTTGGTGGTGACTGCACACAAACGCTGA

Protein Sequence

MGVVTVDRELEAKHRALWALGNYGAIAAHIVAPLGPVLVEACGIGPGDRVLDIAAGTGNASIPAALAGAQVTASDLCPQLVDEGAHESAERGVDITWKEANAEALPFSDGEFDVVMSCIGVMFAPHHDQSARELLRVTRSGGRIGLISWTPEGFIGQLFATMKPFVPAPPPGVSPPPLWGNADHVRTLLGDGIEDFETQRRSLTVDMFADGAAFRDFFKANYGPTIAAYRAVGDDAERTAALDEAIALLGDRYLDSGAMQWEYLVVTAHKR_ 
Gene not present in the RLC0011 CRISPRi library.

Specific References

General References