MSMEG1006
ms1006
-
M. smegmatis · MC2-155
[AlphaFold] [Orthologs] [Phyre2] [UniProt] [MycoBrowser] [TnSeq DB] [SeqHub]
MC2-155 Coordinates: 1075656 – 1076717
Vulnerability Index (VI):
M. tuberculosis homologs Rv3168, fadE36
M. abscessus homologs MAB4910c, MAB0327, MAB4589c
background  +5   0  -5 -10 -15 sgRNA L2FC (+ATc/–ATc) TnSeq Gene Essentiality Predictions (1, 2) Essential Growth Defect Non-Essential Growth Advantage Unknown Operon Legend (3) Operon (1) PMID: 28096490 (2) PMID: 31388080 (3) PMID: 26536359 MSMEG1002 MSMEG1003 MSMEG1005 MSMEG1006 MSMEG1007 MSMEG1008 MSMEG1009
Click the tabs above to view different types of data for this gene. The Vulnerability tab shows CRISPRi fitness data.
DNA and Protein Sequence help

DNA Sequence 

>ms1006_MSMEG1006_dna
CAACGCCGATCATGTCCGAACGCTGCTCGGCGATGGGATCGAGGACTTCGAGACGCAGCGTCGCTCGTTGACGGTGGACATGTTCGCCGACGGAGCCGCCTTCCGCGACTTCTTCAAGGCCAACTACGGTCCCACCATCGCGGCCTACCGCGCCGTCGGTGACGACGCCGAACGCACCGCGGCGCTCGACGAGGCCATCGCCTTGCTGGGGGACCGATATCTCGATTCCGGTGCCATGCAGTGGGAGTACTTGGTGGTGACTGCACACAAACGCTGAGCGCCGCTGGCACGATGTCAGCATGCCCGGTGATGTGCAGCAGTTGCCCACGTTGAGCGAACACGACCAGCAGGCCCTGCAGGCGTGGGTCCGATCCGAGAAGATCGGATCCACTGTCAGCGATGTGGAACCCCTGACCGGCGGCACGCAGAACATCGTCGTGCGCGTCCACGTCGACGGACGCCCGATGGTGCTGCGGCGCCCGCCGGCCCATCCGCGGCCCACGAGCGACAAGACCATGCTGCGCGAGATCGCGGTGCTGCGCACCCTGGCCGGTTCCGGTGTGCCACATCCCGGGTTCATCGCGGGTTGCGCCGATCTGGACGTGCTGGGCGTGGTGTTCTACCTCATGGAGGAGGTGGTCGGGTTCAACCCGGGCAACGAGGTCGCCCCCGCCTACCAACGCGCCGACATGCGCCACGCGGTGGGCCTGTCCTACGCCGCGAGCCTCGCCGGCCTGGGCAACGCGGGGTGGGAGAACAGCGAACTCGCCGCGCTGCGGCGTCCGGGATCCTTTCTCGCACGCCAGGTTCCGCAGTTCCTCAAACTGCTCGAGAGCTATCGCCACGACAACTACCAGCCCGAGTCGATGGCCGGGGCGCAGCCGCTGGCGCAGTGGCTCGACGAACACCGACCGCCCGACGGCGAGCCGGGGATCATGCACGGCGACGCGCACCTGAACAACGTACTGCTGCGCCGTGAGGTCCCCGAGCTCGCGGCGTTCATCGACTGGGAGATGTGCACGATCGGAGATCCGCTGCTGGACCTCGGCTGGATGCTGGTGTGCTGGCCCGACGACCCCAACCCGATCAACGCCGGTTCGGCGCTCGCGGCCCTCGGTGGCCTGGCGACGCGAGCCGAACTACTCGACGCGTACCGGGCGGCCGGCGGCCGACAAACCGACCATCTCGACTGGTATGTGGCCCTTGCGTGTTTCAAGCTCGGCATCGTCATCGAGGGCACATGGTCGCGCTACCTCGCCGGGCAGGCCAACCGCGAGGCCGGCGAACAACTCCACGCCTCGGCCGAGAATCTCATGACCCTCGGCCTGCAGGTGACCAAGGGCGACAGCCCGTTCCGCTGA

Protein Sequence 

>Ms1006_MSMEG1006_protein
MPGDVQQLPTLSEHDQQALQAWVRSEKIGSTVSDVEPLTGGTQNIVVRVHVDGRPMVLRRPPAHPRPTSDKTMLREIAVLRTLAGSGVPHPGFIAGCADLDVLGVVFYLMEEVVGFNPGNEVAPAYQRADMRHAVGLSYAASLAGLGNAGWENSELAALRRPGSFLARQVPQFLKLLESYRHDNYQPESMAGAQPLAQWLDEHRPPDGEPGIMHGDAHLNNVLLRREVPELAAFIDWEMCTIGDPLLDLGWMLVCWPDDPNPINAGSALAALGGLATRAELLDAYRAAGGRQTDHLDWYVALACFKLGIVIEGTWSRYLAGQANREAGEQLHASAENLMTLGLQVTKGDSPFR

Essentiality:

Call Condition Type Source Notes
Unknown in vitro CRISPRi [Bosch & DeJesus et al. (2021)]
Growth Advantage in vitro TnSeq [Dragset et al. (2019)]

You do not have permission to view notes.