MSMEG1034
ms1034
-
M. smegmatis · MC2-155
[AlphaFold] [Orthologs] [Phyre2] [UniProt] [MycoBrowser] [TnSeq DB] [SeqHub]
MC2-155 Coordinates: 1101597 – 1102979
Vulnerability Index (VI):
M. tuberculosis homologs Rv1639c
M. abscessus homologs MAB2318c, MAB1022, MAB2451c
background  +5   0  -5 -10 -15 sgRNA L2FC (+ATc/–ATc) TnSeq Gene Essentiality Predictions (1, 2) Essential Growth Defect Non-Essential Growth Advantage Unknown Operon Legend (3) Operon (1) PMID: 28096490 (2) PMID: 31388080 (3) PMID: 26536359 MSMEG1030 MSMEG1031 MSMEG1032 nrdF2 MSMEG1034 MSMEG1035
Click the tabs above to view different types of data for this gene. The Vulnerability tab shows CRISPRi fitness data.
DNA and Protein Sequence help

DNA Sequence 

>ms1034_MSMEG1034_dna
TCGGCCTGACCGAGGACGTCAAGAAGTTCCTGCGCTACAACGCCAACAAGGCCCTGATGAACCTCGGCTACGAGGCGCTGTTCCCGCGCGACGAGACCGACGTCAACCCGGCGATCCTCTCGGCGCTGGCGCCCAACGCCGACGAGAACCACGACTTCTTCTCCGGCTCGGGGTCGAGCTACGTGATCGGCAAGGCCGTCAACACCGAAGACGAGGACTGGGACTTCTAGACCCGGTCCACGCCGTGCACGCAGGAACCCCGCAGTGAGCTGACAGCCTGCGCTGCTATCAAATAAACGATGCACCAGCTCATAGCGCAGATCCCGCTGACCGACGGCTGGTTTCCAGTCGTCGTCCAGCTGATCGGGGCACTGCTGCTGGGGGCTGCCGTCGGATGGCGCACGCGGCGGTGGCGGTTGCGGATCCTGCCTGCGCTGGTCGCCGCGGCCGCCGTGCTGGCCGGTGTGATGTATCGGTACATCGATTCGATCGGGGTGGCGGGCAACGCCGGACCGCCGCGGTTGTGGGTGTGGATCGCGCTGACCGTGTTGGCCTGTGGTGTCCTGGTGCTGGGCTGGATGAGTGCGCGGTGGTGGCGGCGGATCGTCTCCGTGGCGGCGGTCGGGGCGTGTCTGCTGGCCTGCGGGCTCACCCTCAATATGTGGGTCGGCTATTTCCCGACCGGGTACGCCATGTGGAATCAGCTCACCTCGGGTCCGCTGCCGGGCCAGACGGACCGGCTGACCGTCACCAAGATGCAGCTCGCCCACTTCCGGCCCGCCGGTGGGGTTCTGGTCCCGGTGACCATCGAGGCGGTATCAGGCTTCAGCCACCGCGAGGAACTCGTCTACCTGCCGCCGGCCTGGTTCGCCAGCAGTCCGCCGCCGGAGCTTCCGGCGGTGATGATGATCGGCTCGCAACTGAACACCCCGGCGGACTGGTTACGGGCGGGCAACGTGCAGCCGGTCATCGACCGGTTCGCCGCCGAGCACGGCGGGATGGCACCGGTCTTCGTCTTCGTCGACGCCACCGGCTCGTTCGCCAACGACACCGAGTGTGTCAACGGCGTGCGGGGCAACGCGGCCGATCACCTCGTCAAAGATGTTGTGCCGTATCTGGTCTCGAACTTCGGCGTGCGGCCGGATCGCGACGGCTGGGGCATCGCGGGATGGTCGATGGGCGGCACGTGCGCGGTGGATCTGACCCTGATGCATCCCGACGTCTTCCGGTCGTTCGTCGACATCGCCGGTGACCTGCGGCCCAACGCGGGGGACAAGGCACAGACGATCAGCCGACTGTGGGGTGGCGACGTCGCCTCCTGGGCCGCATACGATCCCGTCACCATCATGGGTCGGCACGGCCCGTACACCGGTCCGTCCGCCGATGTCACGGCGTGGTTCGAGGTGCCCGCGGCGCAGCGCGGCGCGGGCCCCGACCCGGCCAATCCGGAAGGGCAGGACGTCGCCGCGGTCACGCTGTGCGATGCGGCCAGAGCGGTCTCCATCGACTGTTCGGTGATCACCGAACCGGGGCGGCATGACTGGGTTTTCGCCAACACCGCGTTCGCCAGGGCCCTGCCATGGCTGGCCGGCCAACTGCACACGCCTGGCGTCGCGGCTGTGCCGCTGCCGGCGTCTACGTTGGGGCAGCAGCCCACAAACGTCCGGGCGGCCCCGCGCTAG

Protein Sequence 

>Ms1034_MSMEG1034_protein
MHQLIAQIPLTDGWFPVVVQLIGALLLGAAVGWRTRRWRLRILPALVAAAAVLAGVMYRYIDSIGVAGNAGPPRLWVWIALTVLACGVLVLGWMSARWWRRIVSVAAVGACLLACGLTLNMWVGYFPTGYAMWNQLTSGPLPGQTDRLTVTKMQLAHFRPAGGVLVPVTIEAVSGFSHREELVYLPPAWFASSPPPELPAVMMIGSQLNTPADWLRAGNVQPVIDRFAAEHGGMAPVFVFVDATGSFANDTECVNGVRGNAADHLVKDVVPYLVSNFGVRPDRDGWGIAGWSMGGTCAVDLTLMHPDVFRSFVDIAGDLRPNAGDKAQTISRLWGGDVASWAAYDPVTIMGRHGPYTGPSADVTAWFEVPAAQRGAGPDPANPEGQDVAAVTLCDAARAVSIDCSVITEPGRHDWVFANTAFARALPWLAGQLHTPGVAAVPLPASTLGQQPTNVRAAPR

Essentiality:

Call Condition Type Source Notes
Unknown in vitro CRISPRi [Bosch & DeJesus et al. (2021)]
Non Essential in vitro TnSeq [Dragset et al. (2019)]

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