MSMEG1023
ms1023
-
M. smegmatis · MC2-155
[AlphaFold] [Orthologs] [Phyre2] [UniProt] [MycoBrowser] [TnSeq DB] [SeqHub]
MC2-155 Coordinates: 1091966 – 1093375
Vulnerability Index (VI):
M. tuberculosis homologs
M. abscessus homologs
background  +5   0  -5 -10 -15 sgRNA L2FC (+ATc/–ATc) TnSeq Gene Essentiality Predictions (1, 2) Essential Growth Defect Non-Essential Growth Advantage Unknown Operon Legend (3) Operon (1) PMID: 28096490 (2) PMID: 31388080 (3) PMID: 26536359 MSMEG1019 MSMEG1021 MSMEG1022 MSMEG1023 MSMEG1024 MSMEG1025 MSMEG1026 MSMEG1027 MSMEG1028
Click the tabs above to view different types of data for this gene. The Vulnerability tab shows CRISPRi fitness data.
DNA and Protein Sequence help

DNA Sequence 

>ms1023_MSMEG1023_dna
GGGTGATCAGGCTGATGCGCTGTTCCATGCGGCCGACCCTAGTCGACCTTGTGCCCAGCTTGAGCAAAGTGCGTCCCGTAGCCAAGTCGCCCACTGGCTTTCACCTTCCTGACAGGCGTTTCACAGCTTCGGCGCACGCAGAAATTTGCTTGCCGCGTCCACAACCATGAAACGTTTCAATTCTGAGCGCGGTTTCGCTATTGTCCTCGGGGAATTGCGTCGTGTGTGCCTCGCCACACCGGCGCCGTCGGTGACGCGCACACCGCTCTCGTGATCGCGTCGACAACGAAAGGCCAGGGATGACCGCAGGGACGAACAGTGCGCCCACCGCGTCGGCCGCAGCACCGTTCTTGAGCCGGGAGCGCATCGTCGCGCCACCTGGCTGGAGTCGGTGGCTGGTGCCACCGGCGGCGTTGTCGATCCATCTCTCCGTCGGCGCGGCCTACTCGTGGAGCGTCTTCAAGAAACCGTTGGAAGGCGCCCTCGGCATCTCCGGCACCCTCAGCGCGCTGCCGTTCACCATCGGCATCGTCATGCTCGGCCTCTCGGCCGCGGTGTTCGGCACGTGGGTGGACCGCAACGGCCCCCGCAAGGCGATGTTCGCCGCGATGTGCTGCTTCTGCGGCGGCTGGCTCGTCGGCGCGGCCGGCCTGGCGCTGGGGCAATATTGGATCGTGTTGCTCGGCTACGGCGTGCTGGGCGGAATCGGCTGGGGGATCGGCTACATCTCGCCGGTCTCGACGCTGATGAAGTGGTTCCCCGACAAGCCGGGTATGGCGACCGGTCTGGCGATCATGGGATTCGGTGGCGGCGCGCTGATCGCGTCGCCGTGGTCGACCGCCATGCTCAACGCGTTCGGGTCGAGCACCGGCGGCATCGCCAAGACATTCCTGGTGCACGGCATCGTCTACGCGGTGTTCATGTCCCTGGGCTGGATGCTGGTGCGCGTACCGCGCGCGGACTGGCGGCCCCACGGGTGGACGCCACCGCCGGTGCAGGCGGGCTCGATCGTCACCGGTGGGCAGGTGTCGGCCAACAACGCGATCAAGACCCCGCAGTTCTGGCTGCTGTGGATCGTGTTGTGCTTCAACGTGACCGCGGGCATCGGCATCCTGGAGAAGGCCTCGCCGATCTACCAGGACTACTTCCCGACGGCCGGCGCCGCCGCGGGTGCCCTGGCTGCCGCGGCCGCCGGATATGTGGCGATGCTGTCGTTCGGCAACATGGCCGGGCGCATCGGCTGGTCCAGCCTGTCCGATGTGATCGGCCGCAAGAACGCCTACCGGTTGTACCTGGGTGTCGGCGCGCTGCTGTACCTGACGATCACGCTGATGCAGAACTCGAACAAGCTGGTGTTCCTGATTGCCACCATCGTGATCCTGTCGTTCTACGGCGCCGGATTCGCCACCGTGCCTGCCTATCTGCGCGATCTGTTCGGCACCTTCCAGGTGGGCGCGATCCACGGCAGGCTGCTCACCGCGTGGTCGGCCGCGGGCATCCTGGGGCCGATCATCGTCAACTCGATCGCCGATCACCAGACGGCGGCGGGCAAGGAGGGCCCCGCCCTCTACACCCTGTCCTTCTCGATCATGATCGGGCTGTTGGTCGTGGCGCTGGTGTGCAACGAGCTCATCCGGCCGGTGTCGTCGAAATGGCATGAGCCCGCGACCGATACCACCGATCCGATTGCCGAGGAGGCCCGCCGGTGA

Protein Sequence 

>Ms1023_MSMEG1023_protein
MTAGTNSAPTASAAAPFLSRERIVAPPGWSRWLVPPAALSIHLSVGAAYSWSVFKKPLEGALGISGTLSALPFTIGIVMLGLSAAVFGTWVDRNGPRKAMFAAMCCFCGGWLVGAAGLALGQYWIVLLGYGVLGGIGWGIGYISPVSTLMKWFPDKPGMATGLAIMGFGGGALIASPWSTAMLNAFGSSTGGIAKTFLVHGIVYAVFMSLGWMLVRVPRADWRPHGWTPPPVQAGSIVTGGQVSANNAIKTPQFWLLWIVLCFNVTAGIGILEKASPIYQDYFPTAGAAAGALAAAAAGYVAMLSFGNMAGRIGWSSLSDVIGRKNAYRLYLGVGALLYLTITLMQNSNKLVFLIATIVILSFYGAGFATVPAYLRDLFGTFQVGAIHGRLLTAWSAAGILGPIIVNSIADHQTAAGKEGPALYTLSFSIMIGLLVVALVCNELIRPVSSKWHEPATDTTDPIAEEARR

Essentiality:

Call Condition Type Source Notes
Unknown in vitro CRISPRi [Bosch & DeJesus et al. (2021)]
Non Essential in vitro TnSeq [Dragset et al. (2019)]

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