MSMEG1028
ms1028
-
M. smegmatis · MC2-155
[AlphaFold] [Orthologs] [Phyre2] [UniProt] [MycoBrowser] [TnSeq DB] [SeqHub]
MC2-155 Coordinates: 1096036 – 1097223
Vulnerability Index (VI):
M. tuberculosis homologs Rv0561c
M. abscessus homologs MAB3406, MAB3929
background  +5   0  -5 -10 -15 sgRNA L2FC (+ATc/–ATc) TnSeq Gene Essentiality Predictions (1, 2) Essential Growth Defect Non-Essential Growth Advantage Unknown Operon Legend (3) Operon (1) PMID: 28096490 (2) PMID: 31388080 (3) PMID: 26536359 MSMEG1023 MSMEG1024 MSMEG1025 MSMEG1026 MSMEG1027 MSMEG1028 MSMEG1029 MSMEG1030 MSMEG1031
Click the tabs above to view different types of data for this gene. The Vulnerability tab shows CRISPRi fitness data.
DNA and Protein Sequence help

DNA Sequence 

>ms1028_MSMEG1028_dna
ACTCAGCTCGGGGCCCAGCCGGTCGATCGCACGGAACGCGGCGTCGACGATCTCCGAGCGCACCTTTTTACGGTGCTCACGCCAGCGCTCACTGCGGGCGTCAACCTTGACCCCCGGACCGCCGGAATGTGATCTCGACCCTCGCCGCACGCGATTACTGTACTCGCCCTGATAGTGCTGACCTGCTCAGACCGCACACCAACACGCGATCACCCCCGGTGGCCGGTTGTTTTCCCGCCACACTGGCGCGTGCGGGCTTGGGTACTATTTCAGCGACACTCAATCAACGAGACGAGGCTCATGACGCAGCGATACGACCTGGTCATTGCTGGTGGCGGCCCATCGGGGTCGGCAGCGGCATGGCAGGCCGCACAGACCGGCGCCAAAGTGGTCGTCCTGGACAAAGCGGAGTTCCCCCGCGACAAGCCGTGCGGCGACGGACTGACCGCACGCGCGGTGAGCTACCTGCAGAAGATGGGACTGGCCGACGAGGTCGCCACCTATCACCGGGTCAACCGTGTGACGGTCTTCAGCCCCAGCGAATGGGAGCTGTCGTTCCCGCGCAGGCCCGGGATGCCCGACCACGGCCACACCGTCAGCCGGACCCACCTCGACACGGTGCTGCTCAAGCACGCCGAGTCCGCGGGTGCCGAGGTACGCCAGGGCGCCGAGGTGGCCGGACCCGAGTTCGACGCCAACGGCCGCGTGATCGGCGTGGTGCTCAAGAGCGGTGAGAAGGTGTACGGCGACGCGGTGATCGCGGCCGACGGCGCCTACTCACCGATCAAGCGCGCGCTCAAGATCGACTCGGAGTACAACGGCTACTCCGCGATCGCGATCCGCTCCGAGATGCATGCCAACCGGCCGGACTCCGACAGCCTGGACATCTACCTCAAGCTGGTGTTCCAAGGGGATCAGCTGCCCGGCTACGGCTGGGTGTTCCCGATGGGCAACGGCATGTTCAACATCGGGCTGGGCTACGTCAACAGCTACAAGAACTGGCAGTCGATCAACGCGACGCAGTTCCTCGGCGAGTTCCTGCGCTCGCTTCCGCGCGAGTGGGAGCTGCCGCCCATCGAGGAACTCAAGAAGAACAAGAGCGTGCGCGCATGGCGATTGCCCATGGGCTTCACGGCGTGGCCGCCGTGGCGTCCGGGCGTGCTGTTCACCGGCGACTCTCTGGGTGCGGGCAAGCCCGCCTCGGGCGCGGGCATCTCCAAGGCGCTCGAATCCGGTTTGGCCGCAGGTGAATGCGCGATCGCGGCGCTGCAGAACGGTGGCCCCGACGACTTCACCAACTACGCGCAGCGCATGGAGGCCGCGTGGGGGCGCGAGTACCGCCGTGGCCGCTACATGCACAAGTTGATCGGTAAGCCCAAGCTGGCAGAGGCCGGCGTGAAGCTGATCGACAACGCCGCCTTCCGCGACCGCATGCTCAAGGCCCTCTACAAGAAGGCCCAGGGCCCGCAGCACGTCATCAAGAAGTAA

Protein Sequence 

>Ms1028_MSMEG1028_protein
MTQRYDLVIAGGGPSGSAAAWQAAQTGAKVVVLDKAEFPRDKPCGDGLTARAVSYLQKMGLADEVATYHRVNRVTVFSPSEWELSFPRRPGMPDHGHTVSRTHLDTVLLKHAESAGAEVRQGAEVAGPEFDANGRVIGVVLKSGEKVYGDAVIAADGAYSPIKRALKIDSEYNGYSAIAIRSEMHANRPDSDSLDIYLKLVFQGDQLPGYGWVFPMGNGMFNIGLGYVNSYKNWQSINATQFLGEFLRSLPREWELPPIEELKKNKSVRAWRLPMGFTAWPPWRPGVLFTGDSLGAGKPASGAGISKALESGLAAGECAIAALQNGGPDDFTNYAQRMEAAWGREYRRGRYMHKLIGKPKLAEAGVKLIDNAAFRDRMLKALYKKAQGPQHVIKK

Essentiality:

Call Condition Type Source Notes
Unknown in vitro CRISPRi [Bosch & DeJesus et al. (2021)]
Growth Advantage in vitro TnSeq [Dragset et al. (2019)]

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