MSMEG1025
ms1025
-
M. smegmatis · MC2-155
[AlphaFold] [Orthologs] [Phyre2] [UniProt] [MycoBrowser] [TnSeq DB] [SeqHub]
MC2-155 Coordinates: 1094389 – 1094964
Vulnerability Index (VI):
M. tuberculosis homologs Rv0067c, Rv3055, Rv3830c, Rv3557c
M. abscessus homologs MAB0085c, MAB4046c, MAB1873c, MAB1525c, MAB0579c, [+ 1 remaining orthologs]
background  +5   0  -5 -10 -15 sgRNA L2FC (+ATc/–ATc) TnSeq Gene Essentiality Predictions (1, 2) Essential Growth Defect Non-Essential Growth Advantage Unknown Operon Legend (3) Operon (1) PMID: 28096490 (2) PMID: 31388080 (3) PMID: 26536359 MSMEG1021 MSMEG1022 MSMEG1023 MSMEG1024 MSMEG1025 MSMEG1026 MSMEG1027 MSMEG1028 MSMEG1029
Click the tabs above to view different types of data for this gene. The Vulnerability tab shows CRISPRi fitness data.
DNA and Protein Sequence help

DNA Sequence 

>ms1025_MSMEG1025_dna
CCCCTCGAGCACAGGTCCGGTGACGTCTCCCGCGATCGGGATCAGGTGGTCGAACAGCCAGGCGTGCGCGATCTCGGGGATCTCGTCGGCCTCCGTCCAGACGCGCAACAGATCCGCGTAATCGACCTGATGGGGAGGCGTGAAGATGCCGAACTGCACATTCTCGGCAAGTGACATGGGCGGGCCTTTCACCGGATGCCGACGGACGGGCGCACCCGCCTGGCACCATATAAGCGGAACAATGCTCCCCCTACGATACGGAGCGTCGTTCCGCTTATCAAGGGACGAGAGGATCTCCGGATGCCCGACGCCGACAAGACGACGCGAAAGCGCGCCGACGCGCGCCGCAACGAGCAGGCGCTTCTGGAGGCCGCGGCCGCGGCGTTCGTGGCCGCGGGCGTGGAGGTGCCGGTGCGCGATATCGCGGCCCGCGCCGGCGTCGGCATGGGCACCATCTACCGGCACTTCCCCACGCGCGCCGACCTGATCATCGCGGTGTACCGCCACCAGGTCGACGCGTGCGCCGACGCCGGGCCGCAACTGTTGGAACAGACCACGCCGTACGCCGCGCTGGCGAAGTGGGTCGACCAGTTCGTGGACTTCCTGGTGACCAAGCACGGCCTGGCCGCGGCGCTGCATTCGGACAACGCCCGGTACCAGACCCTGCACACCTACTTCCTCGACCGGCTGCTCCCGGTGTGCGCACAGCTCCTGGATGCCGCCGTCGCCTCAAATGAAATCTGTTCGGGCGTCGACCCGTACGTCTTCATGCGTGCGATCGGCAACCTCTGCATCGGCGCCGAAGACGATCCCCGTTACGACGCCCGCGCGATGGTGGCGGTGCTGATCAACGGGCTGCGTCGGCCATCGGAGTGA

Protein Sequence 

>Ms1025_MSMEG1025_protein
MPDADKTTRKRADARRNEQALLEAAAAAFVAAGVEVPVRDIAARAGVGMGTIYRHFPTRADLIIAVYRHQVDACADAGPQLLEQTTPYAALAKWVDQFVDFLVTKHGLAAALHSDNARYQTLHTYFLDRLLPVCAQLLDAAVASNEICSGVDPYVFMRAIGNLCIGAEDDPRYDARAMVAVLINGLRRPSE

Essentiality:

Call Condition Type Source Notes
Unknown in vitro CRISPRi [Bosch & DeJesus et al. (2021)]
Non Essential in vitro TnSeq [Dragset et al. (2019)]

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