MSMEG1039
ms1039
-
M. smegmatis · MC2-155
[AlphaFold] [Orthologs] [Phyre2] [UniProt] [MycoBrowser] [TnSeq DB] [SeqHub]
MC2-155 Coordinates: 1107692 – 1108765
Vulnerability Index (VI):
M. tuberculosis homologs fecB
M. abscessus homologs MAB3390
background  +5   0  -5 -10 -15 sgRNA L2FC (+ATc/–ATc) TnSeq Gene Essentiality Predictions (1, 2) Essential Growth Defect Non-Essential Growth Advantage Unknown Operon Legend (3) Operon (1) PMID: 28096490 (2) PMID: 31388080 (3) PMID: 26536359 MSMEG1037 MSMEG1038 MSMEG1039 serB
Click the tabs above to view different types of data for this gene. The Vulnerability tab shows CRISPRi fitness data.
DNA and Protein Sequence help

DNA Sequence 

>ms1039_MSMEG1039_dna
GCTTGTAGATCAAGTTCCCCTTGGGGCCCATACGTTCCGGAAACGGACGACGTGCCTCGAGTTCTCCGATTGGGGGCGCTTCGGCTACCAAGAGGTCCTCCAAAGATCGTCGGGAATACCCGCTAATTCGAATAAATCCTAGCGCTCTCCGCGCCGCGCGTGCCCGTGGGTCCTACAAACCGTCGTATTCGGCGTGCGGCCCCGGCGTGCGGCGTCTCGGGCACTGCGCTGACCTGCAGGAAACGCACAGGCAGCCGGGACGCGACGGCGCGGAAAGTTACTGAATGTTACCGTCGCCCGGTGCTGACCTTCCGACCGCTGGTGGGGACGGCGCTGATCGCCGCGGCCGCGTCACTGATCAGTGGCTGCGGTACCTCCGGCGAACAGCCCGTGACGCAGCCGTCCATGACGACCAGCGTGACCAAGATCGCCGATGCGGGTGTCCTCGGCAACCAGCGCAGGCCCGACGAATCGTGCGCACCCGAGCCCGTGGCGGCCGACCCGGCCCCGCGGCGTGTCCGCAACGCGACGGCCGACGGCGCCGACATCGCCGAGACCACCGAAGTCGCCGGCGACCCCCAGCGCATCGTCGTGTTGTCGGGCGACCAACTCGACGCGCTGTGCGCGCTGGGCCTGCAGTCGCGCATCGTCGCCGCGGCGCTGCCCGACGGTTCGGACGCGCAGCCGTCGTATTTGGGCACCGTCGTGCACGACGTCCCTCCCGCCGGTGACCGCGCAGCACCCGACGTCGCGGCGATCAGGGCCGCGGATCCGGACCTGATCCTCGGTTCGGCCGCGCTGACGCCCGGTGCGTTCGGTGAACTGTCGGACATCGCCCCGACGGTGTTCACCGGGACACCCGGCGCGGCCTGGCGCGACACGCTACGCGCCGTGGGCGCCGCGACCGGGCGCGCGGGCGCGGCCGACGATCTCATCGCCGGGTTCGAGGACGCCGCCCGCAAGACCGGTGAGGACAACGACGCGGCCCACTTCCAGGCGTCGGTGGTGCAGCTGACCGAGAACACCGTGCGGGTGTTCGGCGCCGACAACTTCCCGGGCGACGTGCTCGCGGCCGTGGGCCTGGATCGTCCTGCCGCACAACGGTTCACCGACAAGCCCTATGAGGAGATCCCGGCCGACAGCGACGACTTCTCGATCGCCGACGCCGACATCGTCTACGTGTCGTTCGCCTCACCGGCCGCGCGGGACAAGGCCGACGCGGTCCTCAAGGGTGACGCCTGGCGGAAACTGTCGGCCAACCGCGACAACCGGGTGTTCGTCGTCAACAACGAGGTGTGGCAGACCGGGCAGAACATCGTGGCCGCTCGCGGGATCCTGGACGACCTGCGCTGGGTCAACGCACCGATCAACTAG

Protein Sequence 

>Ms1039_MSMEG1039_protein
VLTFRPLVGTALIAAAASLISGCGTSGEQPVTQPSMTTSVTKIADAGVLGNQRRPDESCAPEPVAADPAPRRVRNATADGADIAETTEVAGDPQRIVVLSGDQLDALCALGLQSRIVAAALPDGSDAQPSYLGTVVHDVPPAGDRAAPDVAAIRAADPDLILGSAALTPGAFGELSDIAPTVFTGTPGAAWRDTLRAVGAATGRAGAADDLIAGFEDAARKTGEDNDAAHFQASVVQLTENTVRVFGADNFPGDVLAAVGLDRPAAQRFTDKPYEEIPADSDDFSIADADIVYVSFASPAARDKADAVLKGDAWRKLSANRDNRVFVVNNEVWQTGQNIVAARGILDDLRWVNAPIN

Essentiality:

Call Condition Type Source Notes
Unknown in vitro CRISPRi [Bosch & DeJesus et al. (2021)]
Non Essential in vitro TnSeq [Dragset et al. (2019)]

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