ctaD
ms1040
-
M. smegmatis · MC2-155
[TnSeq DB] [SeqHub]
MC2-155 Coordinates: 1108975 – 1110701
Vulnerability Index (VI):
M. tuberculosis homologs
M. abscessus homologs
 +5   0  -5 -10 -15 sgRNA L2FC (+ATc/–ATc) TnSeq Gene Essentiality Predictions (1, 2) Essential Growth Defect Non-Essential Growth Advantage Unknown Operon Legend (3) Operon TSS Legend ? Ju, 2024 (4) Li, 2017 (5) (1) PMID: 28096490 (2) PMID: 31388080 (3) PMID: 26536359 (4) PMID: 38418874 (5) PMID: 29326668 MSMEG1036 MSMEG1037 MSMEG1038 MSMEG1039 ctaD serB MSMEG1042 MSMEG1043
Click the tabs above to view different types of data for this gene. The Vulnerability tab shows CRISPRi fitness data.
DNA and Protein Sequence help

DNA Sequence 

>ms1040_ctaD_dna
GGGCTGTTCGCCGGAGGTACCGCAGCCACTGATCAGTGACGCGGCCGCGGCGATCAGCGCCGTCCCCACCAGCGGTCGGAAGGTCAGCACCGGGCGACGGTAACATTCAGTAACTTTCCGCGCCGTCGCGTCCCGGCTGCCTGTGCGTTTCCTGCAGGTCAGCGCAGTGCCCGAGACGCCGCACGCCGGGGCCGCACGCCGAATACGACGGTTTGTAGGACCCACGGGCACGCGCGGCGCGGAGAGCGCTAGGATTTATTCGAATTAGCGGGTATTCCCGACGATCTTTGGAGGACCTCTTGGTAGCCGAAGCGCCCCCAATCGGAGAACTCGAGGCACGTCGTCCGTTTCCGGAACGTATGGGCCCCAAGGGGAACTTGATCTACAAGCTCATCACGACCACCGATCACAAGCTGATCGGCATCATGTACTGCGTCGTGTGCTTCGCCTTCTTCCTGGTCGGCGGCCTCATGGCGCTGTTCATGCGTACCGAACTCGCGATGCCGGGCTTGCAGTTCCTGTCCAACGAGCAGTTCAACCAGCTGTTCACCATGCACGGCACGGTCATGCTGCTGTTCTATGCGACGCCGATCGTGTTCGGTTTCGCCAACCTGGTGCTGCCGCTGCAGATCGGCGCGCCGGACGTGGCGTTCCCGCGCCTGAACGCGTTGTCGTTCTGGCTGTTCCTGTTCGGTGCGTTGATCGCGATCGCCGGGTTCATCACCCCGGGCGGTGCCGCGGACTTCGGCTGGACGGCGTACTCGCCGCTGACCGACGCGATCCACTCGCCGGGTGCCGGCGGTGACCTGTGGATCATGGGCCTGGCCGTCGGTGGTCTGGGCACCATCCTCGGTGGCGTGAACATGATCACCACCGTGGTGTGCATGCGCGCACCGGGCATGACGATGTTCCGGATGCCGATCTTCACCTGGAACATCCTGGTGACGTCGATCCTGGTGCTGATCGCCTTCCCGATCCTGACCGCGGCGCTGTTCGGCCTGGCCGCCGACCGCCACCTGGGTGCCCACATCTACGACCCCGCCAACGGCGGCGTGCTCCTGTGGCAGCACCTGTTCTGGTTCTTCGGTCACCCCGAGGTGTACATCATCGCGCTGCCGTTCTTCGGCATCGTCTCCGAGATCTTCCCGGTGTTCAGCCGCAAGCCGATCTTCGGTTACACCACGCTGATCTACGCCACGCTGGCCATCGCGGCCCTGTCCGTCGCCGTGTGGGCCCACCACATGTACGCCACGGGCGCGGTGCTGCTGCCGTTCTTCTCGTTCATGACGTTCCTGATCGCGGTGCCGACCGGTATCAAGTTCTTCAACTGGATCGGCACGATGTGGAAGGGCCAGTTGACGTTCGAGACGCCGATGCTGTTCTCGGTCGGCTTCCTCATCACGTTCCTCTTGGGCGGCCTGTCCGGCGTGCTGCTGGCCAGCCCGCCGCTGGACTTCCACGTGACCGACAGCTACTTCGTCATCGCGCACTTCCACTACGTGCTCTTCGGCACCATCGTGTTCGCCACCTACGCGGGCATCTACTTCTGGTTCCCGAAGATGACGGGCCGCCTGCTCGACGAGCGGCTGGGCAAGCTGCACTTCTGGCTGACGTTCATCGGCTTCCACACCACGTTCCTGGTGCAGCACTGGCTGGGTGACGAGGGCATGCCGCGTCGTTACGCCGACTACCTGCCCACCGACGGCTTCACGACGCTGAACGTGATCTCCACGGTCGGTGCGTTCATCCTGGGCGTCTCGAGCTGCCGTTCGTGTGGAACGTGTTCAAGAGCTGGCGTTACGGCGAGCCCGTCACGGTCGACGATCCGTGGGGCTACGGCAACTCCCTGGAGTGGGCCACCAGCTGCCCGCCGCCGCGGCACAACTTCACCGAGCTGCCGCGTATCCGGTCGGAGCGTCCGGCGTTCGAGCTGCACTACCCGCACATGGTCGAGCGGATGCGGGCCGAGGCCCACGTGGGTCGCGCCCACCATCCCGAGCTCGAGACCGCGGACAAGTCCAGCTGA

Protein Sequence 

>Ms1040_CtaD_protein

Essentiality:

Call Condition Type Source Notes
Unknown in vitro CRISPRi [Bosch & DeJesus et al. (2021)]
Unknown in vitro TnSeq [Dragset et al. (2019)]

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