MSMEG1048 (MSMEG1048)

background  +5   0  -5 -10 -15 sgRNA L2FC (+ATc/–ATc) TnSeq Gene Essentiality Predictions (1, 2) Essential Growth Defect Non-Essential Growth Advantage Unknown Operon Legend (3) Operon (1) PMID: 28096490 (2) PMID: 31388080 (3) PMID: 26536359 MSMEG1043 MSMEG1044 MSMEG1045 MSMEG1046 MSMEG1047 MSMEG1048 MSMEG1049 MSMEG1050 MSMEG1051 MSMEG1052
Species: M. smegmatis
Strain: MC2-155
PATRIC Annotation: -
Synonyms:
M. tuberculosis homologs echA17, echA8, echA14, echA11, echA1, [+ 8 remaining orthologs]
M. abscessus homologs MAB3382c, MAB0903, MAB1185c, MAB0905, MAB2737c, [+ 12 remaining orthologs]
Gene Start: 1116366
Gene End: 1117073
Vulnerability Index (VI):
VI Lower Bound:
VI Upper Bound:
[AlphaFold] [Orthologs] [Phyre2] [UniProt] [MycoBrowser] [TnSeq DB] [Gaia]

Essentiality:

Call Condition Type Source Notes
Unknown in vitro CRISPRi [Bosch & DeJesus et al. (2021)]
Non Essential in vitro TnSeq [Dragset et al. (2019)]


DNA and Protein Sequence help

DNA Sequence

GTCGCGGCCCTCCCGGAGGGCCAGCGCGCCGACGGCGAGAACACCGAGACCGACCGGGCGTTCTGGTGCACACCGAAAGCCGGGCTCGACGACTTCGAGGCGGGGAACACCTTCCTGCTGCCGCCGACCTGGACGCAGCTGGACTCCCTCGACGGCCGCACGGTGGCCGAGGTGCTGGCGGTCGAACGCAAGATCGTGACGATCGAGCCCAGCCTGTCGACCGAGGGCAACAACTGGGAGATCGAATACTTCGACAGCGGGCGCTACAACGCTGCACGCAAGCATCGGTCGCCCGGGCAATGAACGAGTTCATCAAGATCGTCCTCGGTTCCGCGCCCGAGCAGACGGGCGTGGCCACGTTGCTGTTGTCGCGGCCCCCGACGAACGCGTTGACCCGCCAGATGTACCGCGAGATCTCCATCGCCGCGAACGAGCTCGCCCAGCGCGCCGACGTGTCGTCGGTCATCGTCTACGGCGGCCACGAGATCTTCTGCGCGGGCGACGACATCCCCGAACTGCGCACCCTCGACGCCGAAGAGACCGCGGCGGCCGACCACGCGCTGCAGCGCTGCATCGAGGCCGTTGCCGCCATCCCCAAACCCACGGTCGCGGCCGTCACCGGGTACGCGCTCGGCAGCGGGATGAACCTGGCGCTGGCCGCGGACTGGCGGGTGAGCGGCGACAACGCCAAGTTCGGCGCCACCGAGATCCTGGCGGGGCTGGCACCGCGCGGCGGCGGCGGGGTACGCCTGGCGGACGCCATCGGGACCAGCAAGGCCAAGGAGCTCGTGTTCAGCGGCCGGTTCGTCGGCGCCGAGGAAGCGCTCGAGATCGGCCTGGTCGACGAGATGGTGGCACCCGACCACGTCTACGAGGCCGCGCTCGCGTGGGCCCGCCGGTTCTCCGACCATCCGGTCGACGTGCTGGCCGCCGCGAAAGCCTCCCTCAACGGGCCGGTCAACTGGCGGGGCCCCCGCCCGACCGATCGGATGGTGGACCGGCCCTGA

Protein Sequence

MNEFIKIVLGSAPEQTGVATLLLSRPPTNALTRQMYREISIAANELAQRADVSSVIVYGGHEIFCAGDDIPELRTLDAEETAAADHALQRCIEAVAAIPKPTVAAVTGYALGSGMNLALAADWRVSGDNAKFGATEILAGLAPRGGGGVRLADAIGTSKAKELVFSGRFVGAEEALEIGLVDEMVAPDHVYEAALAWARRFSDHPVDVLAAAKASLNGPVNWRGPRPTDRMVDRP 
Gene not present in the reference CRISPRi library.

Specific References

General References