MSMEG1008
ms1008
-
M. smegmatis · MC2-155
[AlphaFold] [Orthologs] [Phyre2] [UniProt] [MycoBrowser] [TnSeq DB] [SeqHub]
MC2-155 Coordinates: 1077699 – 1078190
Vulnerability Index (VI):
M. tuberculosis homologs
M. abscessus homologs MAB3424c
background  +5   0  -5 -10 -15 sgRNA L2FC (+ATc/–ATc) TnSeq Gene Essentiality Predictions (1, 2) Essential Growth Defect Non-Essential Growth Advantage Unknown Operon Legend (3) Operon (1) PMID: 28096490 (2) PMID: 31388080 (3) PMID: 26536359 MSMEG1005 MSMEG1006 MSMEG1007 MSMEG1008 MSMEG1009 MSMEG1010 MSMEG1011
Click the tabs above to view different types of data for this gene. The Vulnerability tab shows CRISPRi fitness data.
DNA and Protein Sequence help

DNA Sequence 

>ms1008_MSMEG1008_dna
GACCAGCAGTGCGGGATAGGTCGCGACGGACGCGAGGCCTGCGATGCTTCCGGTCAGCCCGCCGGCGATACCGGCGAACACGAGCAGCACGACGTCCCAAACGGTCATGCGGCTCTCACGCCGATGACGTTACTGATTCAAATTGTTTGCACCCGCGCCGGGGCGAGGACTACCATCGCTGACGTGCTGAGGCGACTCGTAGTAGCAACCCGCAGCGGGGTCTGATTCGGACCGACCCCTCGCTGTGGGTCGTTGCTCTTCGTCGGTCACTCCCTTCAATCAGAGAAGACCGGCACAAAATGTTCACCGCACCAGCAATTCGCACTTCTTCCGCTTCGTCCTCGTCCTCGTTCGCGTCGTGCTTCGCCGCTCCACTGCCGCGCGGCCTGCGCGCCGTCGCCCAGGAGCAAACCTGGGACGCATTCCTGGCCCGGTTCGCCGCCATCGCGGGACCGGTCACGCTGCGCCAATGGTCGTGCGTCGACAGCCGTCCCACAGGCCAGATCGGCCCGCGCGAGTACCAGGCGACGCTGTCGATCGGCGACACCGTCGCCACGTCGAGCGTCACGGCCTACGGGCCCGTCGCCGCGCTGACCGAGATCCTGCACGCGCACGGCATCACCGTGGAGACCACGTCGTTCCACCAGTTGCCGACGCGGGGTCAGACCGCCACCTTCATCGAAGGCAGCAACGGCGTGCACCGTGAGTGGGCGATGGGGCTGGACACCGACCCGGTGCAGTCGGCGCTGCGCGCGGTCATCGCGTGCGCGAATCGCCTCACCGCGCACTAG

Protein Sequence 

>Ms1008_MSMEG1008_protein
MFTAPAIRTSSASSSSSFASCFAAPLPRGLRAVAQEQTWDAFLARFAAIAGPVTLRQWSCVDSRPTGQIGPREYQATLSIGDTVATSSVTAYGPVAALTEILHAHGITVETTSFHQLPTRGQTATFIEGSNGVHREWAMGLDTDPVQSALRAVIACANRLTAH

Essentiality:

Call Condition Type Source Notes
Unknown in vitro CRISPRi [Bosch & DeJesus et al. (2021)]
Growth Advantage in vitro TnSeq [Dragset et al. (2019)]

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